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Query: IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKERTIQPVNNGLNGNITIPGDKSISHRAVMFGAIAEGTTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFLSCVQGDTSIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAIIPNSKLVLENVGMNPTRTGIIDVLEKMGATFTVEPINEGASEPAANITIETSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDRMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCIAEGKTIIEDAEAVGVSYPTFFEELQKLAKLast
1 -24.100PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)  ali follow..  22  4.........PTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNG-SVHIDARDVNVFCAPYDLVKTMRASI---WALGPLVARQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD---GRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDNFLITLGAKISGQGTRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAIS-RGKIICRNAQPDTLDA-VLAKLRDAGADIEV-------GEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAFTLLNLVAEGTGFITET----VFENRFMH--VPELSRMGAHAEIESNTVICHGVEKLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKL..... 401
2 -6.730PF14492.4; F0ST56_RUBBR/409-483; Elongation Factor G, domain II  ali follow..  14  3................................................................................................................................................................................................................................................................................................DTVISMAVEPESNADRKKLNEVLSRLEKQDPTFQVVTSEETGQQIISGMGEL------HLEIIKDRIQR........................................................................ 65
3 -5.580PF02951.12; GSHB_RALSO/1-119; Prokaryotic glutathione synthetase, N-terminal domain  ali follow..  18  6.................................................................................IVDPLSTFKIYKDSTFAMMREAAARGYAIYTCQQSQLTLSGNVVETVATPLALTGDEHDWYRSGDPRLLPLTGFDAVLMRKDPPFDMEYVTSTWLLEIAERQGARVFNKPQAIR.......................................................................................................................................................................................................................................... 119
4 -5.570PF06241.10; I1NIA8_SOYBN/439-540; Castor and Pollux, part of voltage-gated ion channel  ali follow..  7.............................................................................................................................................................................................................................................................LFVQCSRQKGLIKIYHLLNYRKNVFNLCSLPNLEGMTYRQIRHRFQE---------------------VVCGLYRSGKIYFHPNDGEILQQTDKVLFIGSLRDTNTKKPEVILDG............................................................. 102
5 -4.930PF14779.4; F7DYZ6_XENTR/15-268; Ciliary BBSome complex subunit 1  ali follow..  19  5.................................................................................................................................................................HYDPVAGLNTSSCIALADLHGDGDFKMVVGDMGHGPYNMKLKVYGTARMSENALLDLPTGVAAFLMDQNEPR-VASGPFIYVYKNLRPYFKFTLPAMEVNALEKEVWDQAKEDKIDPVTLKEMLESIRDKAEIPLSVRSLRFLMLELQEMEAFVDEDAVCCLVIGTESGELFILDPEAFTILTRVSLSSVPTLLDVTGQ..................................................................... 234
6 -4.920PF05606.9; Q9R2V1_BORBU/1-181; Borrelia burgdorferi protein of unknown function (DUF777 topsan)  ali follow..  15  30..........................................................................................................................................................................................................................................................SNIFIIKIGTHQTQEAIVTIPEFEDLEIHTKNISNISLELSKGDCVLLLQ-SSINIFDKNNDIHFDKHHFYILSAISPKTLNLISDTVKIRANNKIEIANQTTSLKKILDNIVSAINGIKIIGDSVIDESSLKIA............................................ 168
7 -4.860PF15215.4; FDSCP_HUMAN/18-82; Follicular dendritic cell secreted peptide  ali follow..  3.................................................................................................................VSQDQEREKRSISDSDELASGFFVFPYPYPFRPLPPIPFPRFPWFRRNFPIPIPESAPTTPL.............................................................................................................................................................................................................................................................. 64
8 -4.850PF13834.4; A6W8A2_KINRD/1-98; Domain of unknown function (DUF4193 topsan)  ali follow..  17  13....................................................................................................................................................................................................................................................................DELNEDSIEELKARRTDKSSGAVDEDETEAAEGFELPGADLSNEELSVRVLPRQQDEFTCTSCLHEQPDGRIICSDCA........................................................................................... 98
9 -4.770PF16173.3; D3IBS9_9BACT/71-229; Domain of unknown function (DUF4874 topsan)  ali follow..  10  1....................................................................................................................................................................................................................................................................NPER-GFYNLLETNSTDPVTLQALKNIRNDGKTLVQLVYYLPEYR-TSDLPESFITKVEADLDRVREVGMKAILRFAYTSDQNGSDAMSSILRHLDQIKPILHHKVGVIAC-----VQAGFIGAWGENHLNNTTAYNQVISKWLEVLPEERCVQVRTPKY......... 159
10 -4.670PF15338.4; G1R7D3_NOMLE/18-140; p53-regulated apoptosis-inducing protein 1  ali follow..  18  2.......................SSSKASFRSAQASCRGARRQGLGRGDQSLLVMPPNGRAQTHTPGWVSGLLVLGPGWRGIEAPSVSSGSWSSAAVWCLTLGLGLSRPF---LLGGTVLRDRPL----------GSACELSYDQKKAPLRLQ.................................................................................................................................................................................................................................................................................... 123

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;