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anford Burnham Prebys Medical Discovery Institute
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Query: IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSVCHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADNLNPKHRFFTTGSVSSFEHIAERWLGYQISVDCVDLPVKNARICNLast
1 -88.700PF01177.20; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase  ali follow..  37  1.........IGIFDSGYGGLTILSKIREALPQYDYIYLGDNARAPYGTRSFEIVYEFTLQAVTKLFEMGCHLVILACNTASAKALRNIQMNPMRRVLGVIRPTVECIGNITQSRHVGVLATAGTIKSESYPLEVHKLFPDIKVSGEACPLWVSLVENNEAQGEGTDYFIRKNIGNLKDTQIDTVILGCTHFPLLLPKIQQYMPDGITTVTQGELVADSL......................................................... 218
2 -13.100PF15005.4; G1M882_AILME/21-165; Izumo sperm-egg fusion, Ig domain-associated  ali follow..  11  2..........................................................................LICATRVTEALKFLELDY-LPRQSLMQRIKQAVVDIDEDSYMGVVDEPTLEKAAWS------FVKDLTRITESNVRGELLVKELYWMLHLQKDIFARFAAQFQKEAFCPNKCGTMLQSLI.................................................................................. 126
3 -9.010PF01026.19; Y454_HAEIN/4-256; TatD related DNase  ali follow..  17  75......................AERLLRLAQDPKVIAIGEIGLDYYYSADNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRAEKCGGVIHETMEFKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSAEAFAQITTQ...................................................................................... 245
4 -7.420PF09989.7; K4LGW0_9FIRM/688-907; CoA enzyme activase uncharacterised domain (DUF2229 topsan)  ali follow..  15  28...........VELSPVSTRKVYEAGMETISSDTVCY---PAKLVHG--------------IVSLIKQGVKLIFYPCIPKERKEIAGADNCFNCPVINAYPEVIKANMDELKQSGVQFWNPFLPYEDK--KKLSKRLYEELKHSSITLAEIIQAVDAAWNEDLNFKRDIEEVLQWLAETGNRGIVLSGRPY--LDQEVNHGIPKVITALGMAVLTEDSV......................................................... 220
5 -7.310PF06551.10; GLTF_ECOLI/33-146; Protein of unknown function (DUF1120 topsan)  ali follow..  11  1...................LTIIGEYT---PGACTPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDTGTKNAFGLGSAPNGQKIGAAS................................................................................................................................................. 114
6 -7.120PF04811.13; Q19371_CAEEL/531-773; Sec23/Sec24 trunk domain  ali follow..  12  9.......................................................................MIDVSYNAISNGMLPILCQN----LEKVLRNLPRESGQLESSMRIGLA----TFDQAVHFFDISSASPKMLVMSDVQEPFVPMVDGLLLPYNEALPGLRAALAEIPKLFSQSKTTETILQPVVQAGLDALRAGKVILFSTVLPTYDAPGKLKSKNDRSLLGTDKEKNALVPQE-DSYTKLGEQCVKSGVTVDLFLFPNAFIDVAT 208
7 -6.980PF06414.10; Q8P580_XANCP/35-230; Zeta toxin  ali follow..  7.TKTSFEHPKAIIQPGSGKGSLARAADVELGRDVVLIDPDELRNAHSGYTHSDASQWADELLQVTIEGKKNLIFDTTLSNGQWSAELIKDDVEVRAMAAHKLESEHGVDSRFSQQLDREGYGRYVPESHREVVYTRLPISLDTVHAQTTAPVRIFNRQ...................................................................................................................... 186
8 -6.360PF12850.5; Q0RIP6_FRAAA/42-225; Calcineurin-like phosphoesterase superfamily domain  ali follow..  14  3.........LGIVSDVHCEAALLETAAREMVEEEILLAGDAH---EYRFSNEVTEVI----------RAFDMRYISGNHEWRLMGPTGQRAR-----------EAPHVRAANRDFVEAIPTTIDTVVDGRSLRMIHGCPWPPYDRYLNP-------------------ADPDYARCGDLGVDILVLGHTHLPHLQRV------GGTLVINPGS............................................................... 161
9 -5.620PF01083.20; Q73ZC3_MYCPA/34-213; Cutinase  ali follow..  11  2............................................................................CSDVSVVFARGTHQEPGLGNIGAFVDSLTSQLGGRSVDVYAVNYPANDDYHNSANAGADDASAHVQDTVAACPN-SRIVLGGYSQGSTVIDLATNAMPPSVADHVAAVAL.......................................................................................... 111
10 -5.610PF02571.12; K9PRS2_9CYAN/2-241; Precorrin-6x reductase CbiJ/CobK  ali follow..  17  5................LGGTGDAAELAARVAAIEITSLAGRTREPSIPLGDFRIGGFVAGLANYLRQMRIDLLIDATHPFATQISCNAVDEVGVPRLMLIRRPVEAAAKALPLQAQRVFLTVGRQELGTFANLMRIIDLPTP--DAVMPPGLILCDRGPFA-------LHHEREIIIHHKIDTIVSGDATYAKIIVA--RELGLQVVMVNPPGEQVMDVEEALA.................................................... 238

FFAS is supported by the NIH grant R01-GM087218-01
1 1 1 6 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.