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Query: IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELISETLYDLTGAKLAIRFIIPQSQAEEEIDLPPAKPNAAQDDSNHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILKLast
1 -109.000PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein  ali follow..  72  1..............................................................................................................LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN..................................................................................................................... 219
2 -37.600PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix  ali follow..  68  1...................................................................................................................................................................................................................................................................................................................................................................IKLIQQIVANHYNLEIEDMKSRKRTRAIAFPRQVAMYLSRELTDSSLPKIGEKFGGRDHTTVLHAYNKI...................... 69
3 -17.000PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali follow..  22  9..........................................................................................................AEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSAKGANILLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSIMITANQPPAMTLAAVDRL......................................................................................................................................................................................... 172
4 -16.400PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain  ali follow..  20  1....NTTWEKVCDSLQKRLSPGTFKVWIAPLVA-SEHDGQLFLYAPSLFVMNWIQERLFVDITEAVSE.......................................................................................................................................................................................................................................................................................................................................................................................... 63
5 -12.200PF05496.10; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus  ali follow..  20  4................................................................................................SGDRQAEDAQFEVGLRPR-RLADFTGQSKLKENLSIAIEAARMRGEAMDHVLLYGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLH------------QVFFIDEIHRL---LPDVEEML--YSALEDFRVDILVGVGPGARTHSLVSAPLRGRF--GLVLRLDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQVRA.................................................................................................................... 233
6 -10.600PF00910.20; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  16  1..................................................................................................................................................VYAYGESRTGKTLVVDKLITDF-------------QNHFGLGKDTVYSRNPIDQYWSGYRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSA--DSKFIFCSSN...................................................................................................................................................................................................... 103
7 -8.260PF05673.11; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)  ali follow..  13  35........................................................................................................................LKNIERQKDAIVANTRQFVSKLPANNVLLTGARGTGKSSLIKACLNAFVRD--GLRLVEVDKDDLGDDIVELVAQRPER----------VIFCDDLSFEEGESGYKS-IYATSNRRHKDNETYRHTDDGEIHPGEVVEEKISLSERFGLWLSFYPPKQDEYLAIVGHWLRHFGCTDEDI................................................................................................................................................... 226
8 -8.240PF05621.9; S6B007_9PROT/25-277; Bacterial TniB protein  ali follow..  13  38..................................................................................................................................................RLVVGRSLMGKSTLFDEFLRRHPADDDGDAIVSVAKEGIYPEILASLNARIPANTKARQVGMRVLLIDEIHLLEGSANSQRKGLNSIKYLMNELHPVITAGTIEALNAIRTDEQISSRLT--LVRFKDDDAFQELLQCFELMLPLRKPSGDPELSSVIYQHTFGIVGRVAEVLNKAAIYAIREGIE.................................................................................................................. 248
9 -7.940PF03969.14; ZAPE_ECOLI/4-371; AFG1-like ATPase  ali follow..  15  71..................................................................................................................................................LYMWGGVGRGKTWLMDLFYQSL----PGERKQRLHFHRFMLRVHEELTALQGQT-DRFKAETDVLCFDE--FFVSDITDAMLLGGLMKALFARGITLVATSNIPPDEL----------YRNGLQRARFLP-----IDAIKQHCDVMNVDAGVDAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALV-VKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEE............... 363
10 -7.710PF07728.12; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  19  2..................................................................................................................................................LILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHP--EDFVRGWRPTGEGKLSKDPSSKFVVVIEEIN-----RGNPAQIFGELLTLLEAGKRVVGTMNIADRSLALVDLALRRRF..................................................................................................................................................................................... 158

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.