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Query: IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKINRKGGLFLLMFLFLLTGCWDRRELEHVLFINTLGIDFKDNHYIIYPQFINFTNMAKQEGPANRNYSPAYIGKGEGKLLYDAAFDFYKSSQQKVSWEHIKSIVVTERFLKNGNLNQLNDFLSRFFQFRNTMWVFGTKEPLENILATNNIFNISSLYTIMNLPQETIRQSASVDPLRLYTFRSNYYEPGMTTRIPFLATTTEHWKQGHKAFWMLEFNEYGCIAAKSYVNHLNDSDIAGVRWTNKNTNRAPLLLKVKNRAIGELILKKPKIDTKVSIEKGKPHIVMNISLEGDIYQLMKPMPVHKVKKTLRISLKKKLast
1 -30.600PF05504.9; X4ZC10_9BACL/228-392; Spore germination B3/ GerAC like, C-terminal  ali follow..  12  1.........................................................................................................................................................................................................................AGLAVFKQDKLMAYQDGIEGMGLSLIHNKLTEYPLFLDFGNNESATFSMFKVHTSVTANAKDPEPVIYITTQQQAALKEYNGSLDLRNWEKLLSEETKKE 107
2 -9.900PF16408.3; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  1MNKILKTMALLAVPATVAVSCKDDGM-PEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVPLLKDIPDGTAEITFTAQNT............................................................................................................................................................................................................... 117
3 -9.610PF16341.3; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  11  1MKKKLLFILSLTFIGISCFACLDDETKYTNYPLTAFAVAVNNDQTTHKIEIGTIENANVITGVDYTLMDGASISPDPATFIQNWQKEQKVTVTTANNQSTTYTIVLPKYDETLKDIIFIDDF................................................................................................................................................................................................... 140
4 -7.090PF10794.7; YBFJ_BACSU/1-130; Protein of unknown function (DUF2606 topsan)  ali follow..  17  10.QINKYSKLAIFMSILFLCGCSSQTHSSQKETTIPVTLHVEDAK-----LPVEGVQVTIVKAPSSDEEPSTEIGEILGKT............................................................................................................................................................................................................................................. 84
5 -6.980PF06291.9; BORD_ECOLI/1-97; Bor protein  ali follow..  14  1MKK----MLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFI........................................................................................................................................................................................................................................ 81
6 -6.920PF16410.3; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  12  1......IFSFLTAAGLLFAGCHQPDEINSVTAQFVKNPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVLYMNLNEDNYI--KQKKVYKVRGRIVKSKAC-LLEELSLPSQGLNAII-KEVSLIAAGNIEPCTGTYRLSYHATISPDPATTVIDWNASPKLTV.......................................................................................................................................... 203
7 -6.500PF11685.6; Q5NHH2_FRATT/4-270; Protein of unknown function (DUF3281 topsan)  ali follow..  13  1.KKKLLIGTAILSSAAILGSCGKSETATELRIVDLCKFELTDALVSRYTNLLGKTERIESQTPLQAIQGTITWNTPAGATLATN......................................................................................................................................................................................................................................... 91
8 -6.490PF11745.6; S6AY13_PSERE/24-136; Protein of unknown function (DUF3304 topsan)  ali follow..  11  1.................LVGCKAEEPDKGPATASISAYNHTADYIHFYIDGTWGGNARAYGGGGGFV-ISYPREWRPDLTATVRWSTSASKPNPYTGTTWHEKVVPIEYYDKLGSL......................................................................................................................................................................................................... 101
9 -6.410PF14991.4; U3K7R0_FICAL/2-113; Protein melan-A  ali follow..  13  30.......LFILVLAILLAFGCWYYKRRSGYKSLRSKSSSVSTIRNVVGEGEILECKMALQDYKDFNSVVP---------DAPPAYEKIAADLSPPPY............................................................................................................................................................................................................................ 110
10 -6.300PF12092.6; B8FMB6_DESAA/3-128; Protein of unknown function (DUF3568 topsan)  ali follow..  1...KALLALLCAIVLISTSSC---AAVVLGAGAGAGAFTYVKGELVVTNAVINELKISIDSKVDDGITTTFNGRRAGDKPVTIKVTMLDPKITQ-----GIRVGYVGVW--DRQISETIHSHIQER............................................................................................................................................................................................... 126

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.