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Query: IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVDGGQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQIIGKDVHHFDDREVAKEAITERLNNEELast
1 -132.0004c12_A mol:protein length:501 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-  ali model follow..  39  1MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLNVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDL--SKEKYVVLNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGIKVPHRDDLIGLEAAYKKFGGGP 491
2 -127.0004bub_A mol:protein length:498 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD  ali model follow..  38  1MNISTIVSNLKILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEREIDLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKENREGGGKFFALEVSSHALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDD------GVAVLNESLADA----FNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKGLNVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLIKGIDKKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKVPFQDREVVEEIIRDKLKGRK 487
3 -123.0002wtz_A mol:protein length:535 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,  ali model follow..  38  34VRLAALADQVGAALAEGPEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSA----LRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTAGGQQFTAIDPAGGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREI-RVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALERR.. 534
4 -119.0001e8c_A mol:protein length:498 UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-D  ali model follow..  34  3RNLRDLLAPW----VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHC-------GQAIINADDEVGRRWLAKLPDAVAVSMECHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIARSHH 498
5 -44.7004ziy_A mol:protein length:474 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a  ali model follow..  22  16WTAQQLQQATQGYWHKDQPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQLVVADTRLALGQLGA-YRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLG------------PMMLLEL-----RKEHQYAVMELGNHQGEIDYTSKI--HVAGILNIGTAHLGEFGGRDGICRAKSEIYRHI------LPQGVAIVPQQDDFTAEIREAAKSQIMSFGAG--GDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQAQGAKGRLNFIQKTPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEG------AGLHSTKLKAFQTQAEALPFLINLIQQSMSFLFKGSRFTHMETL......................... 460
6 -44.5001gg4_A mol:protein length:452 UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIA  ali model follow..  25  4VTLSQLTDILNGELQ--GADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWV--RQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG------------PMTLLRL-----TPEYDYAVIELANHQGEIAWTVSL--EAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL------PENGIAIMNADNNDWLNWQSVIGSKVWRFSPNAASDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDYNANVGSMTAAVQVLAEMPGYRVLVVGDMAGAESEACHVQVGEAAKAAGIDRVLSVG--------KQSHAISTASGVGEH--FADKTALITRLKLLIAEQQVITILVKGSRSAAM.......................... 439
7 -43.5004cvk_A mol:protein length:475 UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-A  ali model follow..  23  5LRLSQLTVALDARLI--GEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVEREVDAPLPQLLVRDTRAALGRLGALN--RRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAE-----------SVLATRGNLNNDLGVPLTLLQLAPQH-RSAVIELASRIGEIAYTVELT-HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAA------DGTAVLNLDDKAFDTWKARASGPLLTFSLDRPADFRAADLQRDARGMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDYNANPASMLAAIDILSGFSGRTVLVLGDMGGSWAEQAHREVGAYAAGKVSALYAVGPLMAHAVQA-------FGATGRHF----ADQASLIGALATEDPTTTILIKGSRSAAMDKV......................... 446
8 -37.8003zm5_A mol:protein length:465 UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-A  ali model follow..  19  3LTIHEIAQVVGKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEVS-NHPYILVDDVLTAFQSLASYYLEK---TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG---------LPYTV---------MPEGTEKLVLEMGDHLGDIHLLSELA-KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGM------ASGSLLLAPADPI----VEDYLPIDKKVVRFGQGAELEITDLVERKDSLTFKANFL--EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDYNANPTAMKLILETFSAIEGGKKIAVLA--GDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIG---KKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKL......................... 448
9 -37.5003zl8_A mol:protein length:437 UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-A  ali model follow..  21  2..................KDLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDRIFLVESSVDTLAKLAREKLGN---SGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYG---------LPLSI---------DYKGEEILVLEMAASRPDIAHLCKIA-DVAVLLNVGSAHLEFFGTRERIMETKMEIIKHS------KENAIAVTLFDDPDLRKEVPRYR-NTLFFGKEGGDSVLKDWWYYEGS---TIAEFEAFDSLFTVKLSGYWNLLNIAASLCVMRTLGETVDIF--DLASLKTVPGRFNVREKK-GVLIVDDYNASPEAFQTSIEALLRF-PGKKFAVVG--GERSKEFHEELGERLNVLDGVYVFLSE-----------PEAEWIKSKKIILKSDDPEKIAKDLATRVKKGDVVLFASRAVRIERVLEMFEKELEKRAAALE.......... 431
10 -32.1003lk7_A mol:protein length:451 UDP-N-acetylmuramoylalanine--D-glutamate liga  ali model follow..  22  20.......SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVK-KALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASEVVQAANDK-------------------DTLVMELSSFQLM---VKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQN------QMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVD-------AYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKST--NILATQKALSGFDNTKVILIAG-GLDRGNEFDELIPDIT-GLKHMVVLGESASRVKR--------AAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLANASWDMYKNFEVRGDEFID................ 443
11 -31.0004buc_A mol:protein length:450 UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGA  ali model follow..  17  75...........................................................DCDVVYVSPGIKPDTSMIELLSSRGVKLSTELQFFLDNVDPKKVVGITGTDGKSTATALMYHVLSGRGFKTFLGGNFGT----------------------AVEALEGEYDYYVLEMSSFQLF---SERPYLSNFLVLNISEDHLDWHSSFKEYVDSKLKPAFL------QTEGDLFVYNKHIERLRNLEG-VRSRKIPFWTDENFATEKELIVRGKK----------------YTLPGNYPYQNILAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDSKAT-----STHAVLGALSNFDKVVLIMCGIGKKENYSLFVEKASPKLKHLIMFGEISKE----------LAPFVGKIPHSIVENMEEAFEKAMEVSEKGDVILLGGASFDMYE-------NYAKREHFREIFKRHGGDE. 443
12 -29.1002jff_A mol:protein length:445 UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGA  ali model follow..  20  35...........................MDTRMTPPGLDKLPEAVERHTGS--LNDEWLMAADLIVASPGIALAHPSLS-AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA----------------------MLLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDYPFGLQQYRAAKLRIYEN---------AKVCVVNADDALTMPIRG-ADERCVSFGVNMGD-----HLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKAT--NVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQ-----------LAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLS................................... 411
13 -28.6003hn7_A mol:protein length:524 UDP-N-acetylmuramate-L-alanine ligase  ali model follow..  18  4DKIENLYFQGMHIHILGICGTFMGSLALDANIYPPMSTQLEQAGVTI--EGYLIAHLQPAPDLVVVGNAMKRGMDVIEMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYAFFDKRSKFVHYRTAILNNLEFDHADIFADLDAIQTQFHHMVRMIPS------TGKIIMPAATISLEDTLAKEDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATLVNWSMSGLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKLADRRLWAII-----EPRSNTMKMGIHQDSLAQ-SATLADHTLWYEPTGLEWGLKEVIDNATIAVLSSVDDIIKHICTHAKAGDAIVIMSNG................................ 498
14 -28.3001gqq_A mol:protein length:475 UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE  ali model follow..  19  42...........................................GYQISGSDIADGVVTQGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV--------GGLVKSAGKNAHLGASRYLIAEADESDASFLHLQPM---------------VSVVTNMEPDHMDYEGDFEKMKATYVKFLHNLP--------GLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERNVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGENGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMI----HRYSRTRDLFDDFVQVLSDALIMLDVYAAGEAPSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS............................... 461
15 -27.6002f00_A mol:protein length:491 UDP-N-acetylmuramate--L-alanine ligase  ali model follow..  20  43...........................................GYQISGSDLAPNPVTQDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV--------GGLVKAAGVHARLGHGRYLIAEADESDASFLHLQPM---------------VAIVTNIEADHMDYQGDFENLKQTFINFLHNLP--------GRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVML----HRFTRTRDLYDDFANVLTDTLLMLEVYPAGEAPSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN............................... 467
16 -27.4002vor_A mol:protein length:487 FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC  ali model follow..  18  58..............................................................................................GSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIADAPVDVAVVEVGMGG-RWDATNVINAPVAVITPISIDHVDY-ADIAGIAGEKAGI---ITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYDIYLPLHGEHQAHNAVLALASVEAFQLDGDAVRAGFAAVTS-PGRLERMRSAP--TVFIDAAHNPAGASALAQTLAHFDFRFLVGVLSVLGDKDVDG--ILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDSRTGIVITGS................................. 471
17 -27.4004hv4_A mol:protein length:494 UDP-N-acetylmuramate--L-alanine ligase  ali model follow..  19  46...........................................GYQISGSDLAPNSVTQDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFV--------GGLVKAAGTHARLGSSRYLIAEADESDASFLHLQPM---------------VAIVTNIEADHMDYQGDFENLKQTFINFLHNLP--------GRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRIVML----HRYTRTRDLYDDFANVLSDVLLMLDVYAAGEPPSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGN............................... 470
18 -25.9001j6u_A mol:protein length:469 UDP-N-acetylmuramate-alanine ligase MurC  ali model follow..  18  12....................VGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP--AVRDDNPEIVRARMERVPIFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF------LGGI-------------MDSLEHGNYEKGNGPVVYELDESEEFFSEFS----NYLIITNARGDHLEYGNSLTRYRSAFEKISRNTD---------LVVTFAEDELTSHL------GDVTFGVKK-GTYTLEMRSASRAEQKAMVEKNGKRYELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPNIYVIDDYAHTPDEIRNLLQTAKEFENEKIVVIF----HRYSRLEREDGNFAKALADEVVVTEVYDAFEEKKNGISMIWDSLKSLGKEAYFVEKLPELEKVISVSENTVFLFVGAGD............................... 436
19 -24.9001o5z_A mol:protein length:442 folylpolyglutamate synthase/dihydrofolate syn  ali model follow..  18  39.............................................................................................LGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYS-RIRLNEEYISEEDVVKIYETMEPILNELDKEEVDIAVLEVGLGG-RLDATNVVFPLCSTIVTVDRDHEKT-YTIEQIAWEKSGII---------KERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLSEKAIREGLKNAK--LGRFEILEKNGKM-YILDGAHNPHGAESLVRSLKLFNGEPLSLVIGILDDKNRED--ILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKK--FFKNVEVIEDPLEAIEST------ERATVVTGS................................. 414
20 -23.2001fgs_A mol:protein length:428 FOLYLPOLYGLUTAMATE SYNTHETASE  ali model follow..  18  33..............................................................................................GNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTS-RIMIDHEPIPDAALVNAVAFVRAALERLQQQQVDVAVIEVGIGGD-TDSTNVITPVVSVLTEVALDHQKL-HTITAIAKHKAGII---------KRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISLEVPLVGDYQQRNMAIAIQTAKVY-LTPQNIRQGLAASH--PARLEKISDTP--LIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKDYAA--MADRLTAAFSTVYLVPVGTPRALPEAGYEALH-------EGRLKDSWQEALAASLNDV-PDQPIVITGS................................. 412
21 -19.8003n2a_A mol:protein length:437 Bifunctional folylpolyglutamate synthase/dihy  ali model follow..  18  12....................................................ATSPLAAWLCYLEHLHSQPIELGLERVKQVAERLDLL--------KPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIKQAKLDVVILEVGLGG-RLDATNIVDSDVAAITSIALDHTDW-YDRESIGREKAGVF---------RGGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQ-HWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLEAIRQGLQAAS-LPGRFQVVSEQP--LLILDVAHNPHAARYLVNRLAQVINGKVRAVVGMLSDKD---AGTLACLSERVDEWYCAPLEGPRGASAGQLAEHL------VSARQFSDVETAWRQAMQDADTQDVVIVCGSFHTVAHVMA........................ 433
22 -19.6001w78_A mol:protein length:422 FOLC BIFUNCTIONAL PROTEIN  ali model follow..  22  50.....................................................................................................FVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIKQAQLDVVILEVGLGG-RLDATNIVDADVAVVTSIALDHTDW-PDRESIGREKAGIF---------RSEKPAIVGEPEMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLE------NLPLPLVPQPNAATALAAL-RASGLEVSENAIRDGIASAI-LPGRFQIVSESP--RVIFDVAHNPHAAEYLTGRMKALPNGRVLAVIGMLHDKD---AGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHL------GNGKSFDSVAQAWDAAMADAKAEDTVLVCGSFHTVAHVME........................ 412
23 -18.4003mvn_A mol:protein length:163 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamy  ali model follow..  16  1..........................................................................................................................................................................................................................................................................................................................MSSGVDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAVGQQRILAVL----PRSNTMKMGVHK-SLQDADSVFIYQPPTIEWQVSEVLANL-----AQPAISADDVDELVMRIVQQAKPNDHILIMSNG................................ 142
24 -16.3003eag_A mol:protein length:326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamy  ali model follow..  20  42..MSTQLEALGIDVYEGFDAAQLDEFKAD---------VYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENV------------------------HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGLIGGVPENFG------------SARLPQTPRQDPNSQSPFFVIEADEYAFFDKRSKFVHYRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPS-----EGLIVCNGRQQSLQDTLDKGCWTPVEKFGTE--HGWQAGEAN--ADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK.............................................................................................................................................................. 325

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;