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Query: IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKERTIQPVNNGLNGNITIPGDKSISHRAVMFGAIAEGTTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFLSCVQGDTSIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAIIPNSKLVLENVGMNPTRTGIIDVLEKMGATFTVEPINEGASEPAANITIETSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDRMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCIAEGKTIIEDAEAVGVSYPTFFEELQKLAKLast
1 -136.0003rmt_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  66  3MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGLRAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSVLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPTPLKGGTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPSFFDHLDRL.. 430
2 -133.0005buf_A mol:protein length:458 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  49  15.QQFSILPGNKAFKGKFTVPGDKSVSHRSIMFGAIAEGTTHVTGFLEGEDALATLQAFRDMGVSIEPKNGEVTIHGVGMHGLKAPASALYMGNSGTSMRLLSGMLSAQKFDSVMTGDASLSKRPMERIAKPLRLMGAQIQTTGEKGTPPVSITGGQLKGIQYDLPMASAQVKSGILLAGLWAEGETSVTEPEPTRDHTERMLRAFGYDVKTEGNKISLVGGGKLVGTNIQVPSDISSAAFFMVGAAITEGADVVLEAVGINPTRTGVIEILKQMGADLTVENERIAGGEPIADIHIKGSRLKGIHMPEDQVPLAIDEFPALFIAAACAEGQTVLTGAAELRVKESDRIQVMADGLKIMGIDCTPTEDGIIIEGKGKFAGGEIESHHDHRIAMSFSMAGLRTSGPITIHGTETVATSFPTFTELANRA.. 450
3 -132.0004n3p_A mol:protein length:436 Serine Hydrolase OSH18  ali model follow..  49  2...MKLKTNIRHLHGIIRVPGDSSISVLSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGASIVAISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKLRPIHYELPIASNSVKSALMFAALQAKGESVIIEKEYTSNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGIEETLTGIIDVIRAMGGKLEITEID--PVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLADGEVELDRAEAINTSYPSFFDDLESL.. 425
4 -132.0001rf4_A mol:protein length:427 5-enolpyruvylshikimate-3-phosphate synthase  ali model follow..  51  1...MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEID--PVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLADGEVELDRAEAINTSYPSFFDDLESLIH 426
5 -129.0002gg4_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  41  11.....TARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGD-RLPVTLRGPKPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGL.. 443
6 -126.0004gfp_A mol:protein length:462 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  48  22.....QTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVPPLKIYGNPLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGT-LEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEV.. 443
7 -63.0003nvs_A mol:protein length:450 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  27  24......LQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTID-ISSQFLTAFLMSAPLAQGKVTIVGELVSKPYTLHIMEQFGVQVINHDQEFVIPAGQSYVSGQFLVEGDASSASYFLAAAAIK-GGEVKVTGIGKNSIQIQFADALEKMGAQIEWGDDY---------VIARRGELNAVDLDFNHIP---DAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTP-VTINDPKCTSKTFPDYFDKFAQLSR 444
8 -62.1001eps_A mol:protein length:427 5-ENOL-PYRUVYL-3-PHOSPHATE SYNTHASE  ali model follow..  27  1MESLTL-QPIARVDGTINLPGSKTVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIR-SKPYIDITLNLMKTFGVEIENQHQQFVVKGGQSYQSGTYLVEGDASSASYFLAAAAIK-GGTVKVTGIGRNSMQGDIADVLEKMGATICWGDDY---------ISCTRGELNAIDMDMNHIP---DAAMTIATAALFAKGTTRLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTP-VTILDPKCTAKTFPDYFEQLARISQ 425
9 -55.3002bjb_A mol:protein length:462 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE  ali model follow..  22  1MKTWPAPTAPTPVRATVTVPGSKSQTNRALVLAALARGASTISGALRSRDTELMLDALQTLGLRVDGVGSELTVSGRI----PGPGARVDCGLAGTVLRFVPPLAALGSVPVTFDGDQQARGRPIAPLLDALRELGVAV----DGTGLPFRVRGGSLAGGTVAID-ASSQFVSGLLLSAASFTDGLTVQSSLPSAPHTAAMLRQAGVDIDDSTPNRWQVRPGPVAARRWDIEPDLTNAVAFLSAAVVS-GGTVRITGWPRVSVQPAILAILRQLNAVVIHADSSLEVRGP--------TGYDGFDVDLRAVGELTPSVAALAALAS-PGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVIT-ATPLRPGIWRAYADHRMAMAGAIIGLRVAG-VEVDDIAATTKTLPEFPRLWAEMV. 423
10 -28.8003zh3_A mol:protein length:419 UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFE  ali model follow..  24  2..RKIVINGGLPLQGEITISGAKNSVVALIPAIILADDVVTLDCVPDISDVASLVEIMELMGATVKRYDDVLEIDPRGVQNIPMPYGKI---NSLRASYYFYGSLLGREATVGLPGGCDLGPRPIDLHLKAFEAMGATAS--YEGDNMKLSAKDTGLHGASIYMDTVSVGATINTMIAAVKANGRTIIENAAREPEIIDTLLNNMGAHIRGAGTIIIIDGVERLHGTRHQVIPDRIEAGTYISLAAAV-GKGIRINNV-LYEHLEGFIAKLEEMGVRMTVSEDSIF--------VEEQSNLKAINIKTAPYPGFTDLQQPLTPLLLRANGRGTIVDT-EKRVNH-------VFELAKMDADISTTNGHILYTGGRDLRGASVKA-TDLRAGAALVIAGLMAEGKTEITNIEFILRGYSDIIEKLRNL.. 410
11 -25.5005bq2_A mol:protein length:429 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  22  4..DKLIITGGNRLDGEIRISGAKNSALPILAATLLADTPVTVCNLPHLHDITTMIELFGRMGVQPIDEKLNVEVDASSIKTLVAPYELVKTMRASI---LVLGPMLAREAEVALPGGCAIGSRPVDLHIRGLEAMGAQIE---EGGYIKAKAPAGGLRGGHFFFDTVSVTGTENLMMAAALANGRTVLQNAAREPEVVDNCLNAMGANVQGAGSTIVIEGVKRLGGARYDVLPDRIETGTYLVAAAAT-GGRVKLKDTDPTILEA-VLQKLEEAGAHIST-------GSNWIELDMKGNRPKAVNVRTAPYPAFPTDMQAFISMNAVAEGTGAVIET----VFENRFMH--VYEMNRMGAQILVEGNTAIVTGVPKLKGAPVMA-TDLRASASLVIAGLVAEGDTLIDRIYHIDRGYECIEEKLQLL.. 414
12 -25.5002yvw_A mol:protein length:425 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  20  9YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTVFINP----SINSFITNQEIIRRMRASVLSLGPLLGRRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREG-----VYVNLKEKRRVHFKFDLVTVTGTENALLYLASVPEESILENIALEPEVMDEVLKKMGAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVLT-DGEILLENARINHLRA-VVEKLKLIGGEVVEENGNLR--------VFRKESLRACDIETQVYPGFPTDMQAFMALLSVAKGKSRIKEN-------EHRFH--AQELNRLGANITVRGNTAYVEGVERLYGSEVYS-TDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKL.. 415
13 -25.5004fqd_A mol:protein length:479 NikO protein  ali model follow..  19  14..PLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYDGETFTVDASAWDRAELPADLVGRIHGSL---YLLPALVSRVARLSASGGCPIGEGPRGRPDE-MGRFGVTTRLTADGSVDLTALTPCTIDMLDYTSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTDTVLRDLGADIEFAGPVIHGRGPESLHPVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRA-APEFDLLDRMGVRVDV-------GADEVTAHPLTKPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREA-------EHRFG--APELEALGIRTAVDDTVLRVDGPCPRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHHHLARGYRDLVEDLVKL.. 448
14 -24.7003r38_A mol:protein length:454 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  21  20..EKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLAKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVNDEVTVDATGEITSDAPFEYVRKMRASI---VVMGPLLARSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENG-----IEATAEKLVGAKVYLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVDNFLNQMGARVIGAGTVIRIEGVKELTATEHSIIPDRIEAGTFMIAAAIT-GGNVLIEDA-VPEHISSLIAKLEEMGVQIIEEENRVIGPDKLKAVDVKTMPHPGFPT---------DMQSQMMVIQMLSEGTSIMTET-ENRFMH-------VEEMRRMNADMKIEGHSVIISGPAKLQGAEVAA-TDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQAL.. 427
15 -24.5004r7u_A mol:protein length:422 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  22  4MEKFRVIGSTQPLQGEVTISGAKNAALPILFASILAEEPVEVANVPHLRDIDTTMELLERLGAKVERNG-SVHVDAGPINQYCAPYDLVKTMRASI---WALGPLVARQGQVSLPGGCAIGARPVDLHIHGLEQLGATITLEDGYVKAHVD---GRLQGAHIVMDKVSVGATITIMCAATLAEGTTVLDNAAREPEIVDMFLNKLGAKISGAGTSITIEGVERLGGGKHAVVPDRIETGTFLVAAAVS-RGKIVCRNTHAHLLEA-VLAKLEEAGAEIEC-------GEDWISLDMTGRELKAVTVRTAPHPGFPTDMQAFTLLNMMAKGGGVITET----IFENRFMH--VPELKRMGAKAEIEGNTVICGDVDRLSGAQVMA-TDLRASASLVIAGCIAKGETIVDRIYHIDRGYERIEDKLSAL.. 413
16 -24.4001dlg_A mol:protein length:419 UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERA  ali model follow..  22  2..DKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDG-SVWIDASNVNNFSAPYDLVKTMRASI---WALGPLVARQGQVSLPGGSAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVN---GRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDNFLVALGAKISGQGTRITIEGVERLGGGVYRVLPDRIETGTFLVAAAIS-GGKIVCRNAQPDTLDA-VLAKLREAGADIET-------GEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAFTLLNLVAEGTGVITET----IFENRFMH--VPELIRMGAHAEIESNTVICHGVEKLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRAL.. 409
17 -24.3002rl1_A mol:protein length:424 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  20  2..DKFRVYGQSRLSGSVNISGAKNAALPILFAAILATEPVKLTNVPELKDIETTLKILRQLGVVVDRDATAVLLDASNINHFTAPYELVKTMRASI---WALAPLVARQGQVSLPGGCSIGARPVDLHISGLEKLGADIVLEEGYVKAQVS---DRLVGTRIVIEKVSVGATLSIMMAATLAKGTTVIENAAREPEIVDDFLNKMGAKITGAGSHITIEGVERLTGCEHSVVPDRIETGTFLIAAAIS-GGCVVCQNTKADTLDA-VIDKLREAGAQVDV-------TENSITLDMLGNRPKAVNIRTAPHPGFPTDMQAFTLLNMVAEGTSIITET----IFENRFMH--IPELIRMGGKAEIEGNTAVCHGVEQLSGTEVIA-TDLRASISLVLAGCIATGETIVDRIYHIDRGYEHIEDKLRGL.. 411
18 -24.2003vcy_A mol:protein length:430 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  23  1MDKFRIQGSDKPLSGEVTISGAKNAALPILFASLLAEEPVEVANVPKLRDVDTTMELLKRLGAEVSRNG-SVHIDASGVNDFCAPYDLVKTMRASI---WALGPLVARKGQVSLPGGCAIGARPVDLHIHGLEQLGATIKLEEGYVKAEVD---GRLKGAHIVMDKVSVGATITVMCAATLAEGTTVLENAAREPEIVDNFLNAIGAKVSGMGTTITIEGVERLGGGYHEVVADRIETGTFLVAAAVS-GGKIVCKNTKAHLLEA-VLAKLEEAGADVQT-------GDDWISLDMTGRELKAVNIRTAPHPAFPTDMQAFTLLNMMAKGSGIITET----IFENRFMH--IPELQRMGAHAEIEGNTAICGDTDGLSGAQVMA-TDLRASASLVIAGCIAKGETIVDRIYHIDRGYDKIEDKLTAL.. 410
19 -24.2002z2c_A mol:protein length:423 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  22  2..DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERDG-SVHIDARDVNVFCAPYDLVKTMRASI---WALGPLVARQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD---GRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDNFLITLGAKISGQGTRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAIS-RGKIICRNAQPDTLDA-VLAKLRDAGADIEV-------GEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAFTLLNLVAEGTGFITET----VFENRFMH--VPELSRMGAHAEIESNTVICHGVEKLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRAL.. 409
20 -23.5003sg1_A mol:protein length:458 UDP-N-acetylglucosamine 1-carboxyvinyltransfe  ali model follow..  21  20..EKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLADGKNVLSEVPVLSDVYTINEVLRHLNAEVVFENNQVTIDASKELNIEAPFEYVRKMRASV---QVMGPLLARRARIALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVE---GELKGAKIYLDFPSVGATENIMSAATLAKGTTILENAAKEPEIVDNFLNAMGAKVRGAGTTIRIEGVDKLYGANHSIIPDRIEAGTFMVAAAIT-GGDILIENA-VPEHLRSITAKMEEMGVKIIEENERVIGPDKLKAVDIKTMPHPGFPT---------DMQSQMMALLLQADGTSMITET-ENRFMH-------VEEFRRMNADIKIEGRSVIMNGPNSLQGAEVGA-TDLRAAAALILAGLVSEGYTRVTELKHLDRGYVDFHKKLAAL.. 428

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;