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Query: IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRKAPLKVLSSLAIAAIIGCTSVMSAPLAYAETPAKEKENVSTTPIDYNLIQEDRLAEALKERGTINPASSKEETKKAVEKYIEKKQGDQANKEILPADTAKEASDFVKKVKEKKMEEKEKVKKPEKNVSPEQKPEPNKKQLNGQVPTSKAKQAPYKGSVRTDKVLVLLVEFSDYKHNNIDQTPGYMYSNDFSREHYQKMLFGNEPYTLFDGSKVKTFKQYYEEQSGGSYTTDGYVTEWLTVPGKASDYGADGSSGHDNKGPKGARDLVKEALHAAAEKGLDLSQFDQFDRYDTNSDGNQNEPDGVIDHLMVIHAGVGQEAGGGKLGDDAIWSHRSKLAIDPVAIEGTKSKVDYFGGKVAAHDYTIEPEDGAVGVFAHEFGHDLGLPDEYDTKYTGTGSPVEAWSLMSGGSWTGKIAGTEPTSFSPQNKDFLQKNMGGNWAKILEVDYDKIKRGVGVPTYIDQSVTKSNRPGVVRVNLPGKSVETIKPEFGKHAYYSTRGDDMHTTLETPFFDLTKGTNAKFDYKANYELEAECDFVEVHAVTEDGTKTLIDRLGEKVVQGDKDTTDGKWIDKSYDLSQFKGKKVKLQFDYITDPAVTYKGFAMDHVNVTVDGQVVFSDDAEGQSKMNLNGFVVSDGTEKKAHYYYLEWRNYAGSDNGLKAGKGPVYNTGLVVWYADDSFKDNWVGVHPGEGFLGVVDSHPEAFVGNLNGKPTYGNTGMQIADAAFSFDQTPAWSVNSLTRGQFNYSGLQGVTTFDDSKVYSNNQIADAGRKVPKLGLKFQVVGQADDKSAGAVWIKRLast
1 -186.0004yu5_A mol:protein length:756 Immune inhibitor A, metalloprotease  ali model follow..  99  1.................................................NLIQEDRLAEALKERGTINPASSKEETKKAVEKYIEKKQGDQANKEILPADTAKEASDFVKKVKEKKMEEKEKVKKPEKNVSPEQKPEPNKKQLNGQVPTSKAKQAPYKGSVRTDKVLVLLVEFSDYKHNNIDQTPGYMYSNDFSREHYQKMLFGNEPYTLFDGSKVKTFKQYYEEQSGGSYTTDGYVTEWLTVPGKASDYGADGSSGHDNKGPKGARDLVKEALHAAAEKGLDLSQFDQFDRYDTNSDGNQNEPDGVIDHLMVIHAGVGQEAGGGKLGDDAIWSHRSKLAIDPVAIEGTKSKVDYFGGKVAAHDYTIEPEDGAVGVFAHAFGHDLGLPDEYDTKYTGTGSPVEAWSLMSGGSWTGKIAGTEPTSFSPQNKDFLQKNMGGNWAKILEVDYDKIKRGVGVPTYIDQSVTKSNRPGVVRVNLPGKSVETIKPEFGKHAYYSTRGDDMHTTLETPFFDLTKGTNAKFDYKANYELEAECDFVEVHAVTEDGTKTLIDRLGEKVVQGDKDTTDGKWIDKSYDLSQFKGKKVKLQFDYITDPAVTYKGFAMDHVNVTVDGQVVFSDDAEGQSKMNLNGFVVSDGTEKKAHYYYLEWRNYAGSDNGLKAGKGPVYNTGLVVWYADDSFKDNWVGVHPGEGFLGVVDSHPEAFVGNLNGKPTYGNTGMQIADAAFSFDQTPAWSVNSLTRGQFNYSGLQGVTTFDDSKVYSNNQIADAGRKVPKLGLKFQVVGQADDKSAGAVWIKR 750
2 -14.2004hx3_A mol:protein length:134 Extracellular small neutral protease  ali model follow..  23  6........................................................................................................................................................................................................................................................................................................................VTYPSNAPSFQQEIANAAQIWNSSVRSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQYDSTRVTAHETGHVLGLPDHYQGPCS---------ELMSGGGPGPSCTNPYPNA....................................................................................................................................................................................................................................................................................................................................................................................... 121
3 -12.4005abk_A mol:protein length:84 METALLOPROTEASE  ali model follow..  27  4..........................................AQTPIDLGVVNEDKLIEMLVRTGQIPADASDVDKRIALERYLEEKIRSGFKGDAQFGKKALEQRAKILKVIDKQKGPHK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 82
4 -9.6403ujz_A mol:protein length:869 Metalloprotease stcE  ali model follow..  2............................SHMASADNNSAIYFNTSQPINDLQGDSQPHLTSLRKSLLLVRPVKADDKTPVQVEARDDNNKILGTLTLYPPSSLPDTIYHLDGVPEGGIDFTPHNGTKKIINTVAEVNKLSDASGSSIHSHLTNRDIYLPQGPDLEGKMVRFVSSAGYSSTVFYGDRKVTLSVGNTLLFKYVNGQWFRSGELENNRITYAQHIWSAELPAHW-----IVPGLNLVIKQGNLSGR-TTPRDRFDFAADAAAHREYFQTIPVSRMIVNNYAPLH------SGTMRQRIGVSHGIDNANYGLNSTAGLGENSHPYVVAQLAAHNSRGNYANGIQVHGGSGGGGIVTLDSTLG------NEFSHDVGHNYGLGH--GSVHRSAENNNSTWDAMAGGS--PFSAANRFTMYTPNSSAIIQFFENKAVFDSRSSTGFSKWNADTQEMEPYEHTIDRAEQITAVNELSESKMAELMAEYAVVKVHMWNGNWTRNIYIPTASADNRGSILTINHEAGYNSYLFINGDEKVVSQGYKKSFVSDGQFWKERDVVDTREARKPEQFGVPVTTLVGEGTLSSYIYPAMYGAYGFTYSDDSQNLSDNDCQLQVDTKEGQLRFRLANHRANNTVMNKFHINVPTESQPTQATLVCNNKILDTKSLTPAPEGLTYTVNGQALPAKENEGCIVSVNSGKRYCLPVGQRSGYSLPDWIVGQEVYVDSGAKAKVLL--SDWDNLSYNRIGEFVGNVNPADMKKVKAWNGQYLDFSKPRSMRVVYK............. 869
5 -9.1601cgl_A mol:protein length:169 FIBROBLAST COLLAGENASE  ali model follow..  15  13.................................................................................................................................................................................................................................................HLRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTADIMISFVRGDHRDNSPFDGPG------GNLAHAFDPGPGIG---GDAHFDEDERWTNN----------------------------------FREYNLHAHELGHSLGLSHMYPSYTFSGDVQLAQDDIDGQAIYGRSQNPVQP......................................................................................................................................................................................................................................................................................................................................................................................... 169
6 -9.1503ma2_D mol:protein length:181 Matrix metalloproteinase-14  ali model follow..  15  1......................................................................................................................................................................................................................................YAIQGLKWQHNEITFCIQNYTPKVGEYATYEAIRKAFRVIREGHEKQADIMIFFAEGFHGDSTPFDGEG------GFLAHAYFPGPNIG---GDTHFDSAEPWT-------------------------------VRNEDLNGNDIFVHELGHALGLEHSSDPS..................................................................................................................................................................................................................................................................................................................................................................................................................... 143
7 -9.1101qib_A mol:protein length:161 PROTEIN (GELATINASE A)  ali model follow..  17  9.................................................................................................................................................................................................................................................QITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRADIMINFGRWEHGDGYPFDGKD------GLLAHAFAPGTGVG---GDSHFDDDELWS---------------------------------LGKGVGYSLFAHEFGHAMGLEHMAPIYTYTKNFRLSQDDIKG-----QELYGASP......................................................................................................................................................................................................................................................................................................................................................................................... 161
8 -9.0501gkc_A mol:protein length:163 92 KDA TYPE IV COLLAGENASE  ali model follow..  20  15.................................................................................................................................................................................................................................................NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTADIVIQFGVAEHGDGYPFDGKD------GLLAHAFPPGPGIQ---GDAHFDDDELWSLG---------------------------------KGQGYSLFAHEFGHALGLDHSSVPE..................................................................................................................................................................................................................................................................................................................................................................................................................... 136
9 -9.0101hv5_A mol:protein length:165 STROMELYSIN 3  ali model follow..  17  2......................................................................................................................................................................................................................................FVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTADIMIDFARYWHGDNLPFDGPG------GILAHAFFPKTHRE---GDVHFDYDETWTIG---------------------------------DNQGTDLLAHEFGHVLGLQHTTAAK..................................................................................................................................................................................................................................................................................................................................................................................................................... 134
10 -8.9905I12 Entity 1(prereleased)  ali follow..  20  8.................................................................................................................................................................................................................................................NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTADIVIQFGVAEHGDGYPFDGKD------GLLAHAFPPGPGIQ---GDAHFDDDELWS---------------------------------LGKGVGYSLFAHEFGHALGLDHSSVPE..................................................................................................................................................................................................................................................................................................................................................................................................................... 129

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;