current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340
# Score Template Links and tools%idFirst MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGMEDPNLLDLast
1 -5.080sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 1239-1372)  ali follow..  19  1..........................................VSINIDL------KAPVIVI--PQSSISTNAVVVDLGLIRVHNQFSLVSDEDYLNPPVI-DRMDVQLTKLTLYRTVIQPGIYHPDIQLLHPINLEFLVNRNLAA-VPVVEIKGHLDSMNVSLNQEDLNLLFRILTENLC.................................................................................................................................................................. 134
2 -5.020sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)  ali follow..  11  49.........................................................KIINLYHHPGCGGTTLAMHVLWDLKKNFRCAVLKNKTTD-----FAEIAEQVINLVTYRAKSHQDYIPV-----------LLLVDDFEEQENVYFLQNAIHSVLAEKDLRIILNCMRSRNPDESAKLADSIALNY....................................................................................................................................................... 173
3 -4.670sp|Q92766|RREB1_HUMAN Ras-responsive element-binding protein 1 OS=Homo sapiens GN=RREB1 PE=1 SV=3 (Range: 390-503)  ali follow..  24  12................................................................PQDPGCTNLLSLSPFEAASLGGSLTVLPATKSLQP-FQKGFIIQPDSSIVVKPISGESAIELA---------DIQQILKMAASAP.................................................................................................................................................................................................. 92
4 -4.310sp|Q9H422|HIPK3_HUMAN Homeodomain-interacting protein kinase 3 OS=Homo sapiens GN=HIPK3 PE=1 SV=1 (Range: 1-90)  ali follow..  14  5...........................................................VLVYPPYVYQTQSSAFCSVKKLKVEPSSCVFQERNYPRTYVNGRNFGN-------SHPPTKGSAFQTKIPFNRPRGHNFSLQTSAVVLKNTA................................................................................................................................................................................................ 89
5 -4.260sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 1753-1883)  ali follow..  17  2..........................................LLMDINL------KAPVIII--PQSSVSPNAVIADLGLIRVENKFSLVPMEHYSLPPVI-DKMNIELTQLKLSRTILQASLPQNDIEILKPVNMLLSIQRNLAA-IPGMEIKGKLKPMQVALSEDDLTVLMKIL....................................................................................................................................................................... 130
6 -4.050tr|C9JKX0|C9JKX0_HUMAN Uncharacterized protein OS=Homo sapiens GN=KIAA0430 PE=4 SV=1 (Range: 1-169)  ali follow..  21  61.............................................................................................EHISQSELTPHLCTNSLHLNVVPPVCLKGSLYCEDCLNKPARNSIIDAAKVWPNIPPPNT-----------QPAPLAVPLCNGCGTKGTGKETTLLLATSLGKAASKFGSPEVAVAGQVL.................................................................................................................................. 169
7 -4.030sp|Q68CZ1|FTM_HUMAN Protein fantom OS=Homo sapiens GN=RPGRIP1L PE=1 SV=2 (Range: 1086-1315)  ali follow..  13  120.........................................................NVIYVDKENNKAKRDILKAILQKQEMPNRSLRFTDPPEDEQDLECEDIGVDLADMFQEGRDLIEQNIDVFDARADGEGIGKLRV-TVEALHALQSVYKQYRDD....................................................................................................................................................................................... 227
8 -4.000sp|Q9H0E3|SP130_HUMAN Histone deacetylase complex subunit SAP130 OS=Homo sapiens GN=SAP130 PE=1 SV=1 (Range: 167-316)  ali follow..  19  16.....QASAIPVATISGQQGHPSNLHHIMTTNVQMSIIRSNAPGPPLHIGASHLPRGAAAAAV---SSSKVTTVLRPTSQLPNAATAQPAV--QHII-----------------------HQPIQSRPPVTTSNAIPPAVVATVSATRAQSPV.............................................................................................................................................................................................. 136
9 -3.980sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2 (Range: 1209-1336)  ali follow..  11  10.............................................................VVIPQSPVSENVFVADFGLITMTNTFHMITESQSSPPPVI-DLITIKLSEMRLYRSRFINDAYQEVLDLLLPLNLEVVVERNLCW-VPCFNVNAQLKPMEFILSQEDITTIFKTLH...................................................................................................................................................................... 128
10 -3.720sp|Q8IWB9|TEX2_HUMAN Testis-expressed sequence 2 protein OS=Homo sapiens GN=TEX2 PE=1 SV=2 (Range: 1016-1104)  ali follow..  20  7........................................................................................................................................................................................LLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARREVTLVHVTDWIEKKLEQEFQKVFVMPNMDDVYITIMH................................................................................. 89

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;