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Query: IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGMEDPNLLDLast
1 -4.850PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  17  1.............................................................MYTIQANPSGTRSMEILVTIEKYSLFQHLIDSNGIVDEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYHNNMKAFGLQQLIKL.................................................................................................................................................................................................... 90
2 -4.060PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  14......................LLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAK-VGIVEGVFNYVFNSDSTFTSALKRGSLKG----------------TYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLL-KFLSTVSSISSNTTLKAINKLASEYDGMMLGFD....................................................................................................................... 204
3 -3.320HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  11  1........................................................................................................................................................................MFSLLLSTFAMMGLTFVIGFFVAGVIKLIAS---------AADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGRED----FSRGVTKHPG----GVSPGESERGLMDYFYP-------EDTRTMFLRKEEQMLQHDKKNNKTS................... 139
4 -2.760HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  12  2........................................................................................................................DEAVAMAQ-----DAIGLMLEDCEVCPKPSLPSAIHVDTGDFIAMIPFDMEEYQKQFKPVKKTLSIPGWLNDAAESAHINFSS............................................................................................................................................ 79
5 -2.650HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  14  35............NEVAYGFGYG--QPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKSVQIYAPYTEGGLEKVAIQLLNFEKSS----------ELAPGASEIVSVKVDLQYIASYDTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGS....................................................................................................................................................................................... 194
6 -2.060PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  18............................................................SRFETEHLAKYHLSFQVNFE-----LFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDILFEDHILIKAGKSITVGFKNTQFSLIPEALFEKDYLKEYLTLNTTLDREPDEEYFYKQRQTEAVNVFAQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAA-----------------EKSVFIQVEQYFLTII----VKQGKKLIFCNSFTFNTSEDFVYFILF-DQLELNPEKCPVVVFGEITHDSESFSKLYKYI.................. 262
7 -1.880HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  14  30............RALKRRLHAGELVSPYKNLYADRTTMTREQQSLQVIRALSAIHPQWVF-VYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHGILLTTPARTLLDCAPQALPIYDSALRKSLTTIEEVQSLMIANPLSENGGESLMRGQITELSFGSSCWQCSS...................................................................................................................................................................... 223
8 -1.740PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  1...................................................................................................................................................................................MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKIT---------INPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYF---------GKTTYYRIYRKERYITIQEQDYIRDSF.................. 129
9 -1.610HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  14  14............................................................DYLCPALRGHIQYFATSYSKSADHEGRAAIMDGVEVLRSNYYTYF----STTLKDCDSAKEAIDRSHAYALEQGTFDQKAFYEAFGIFDNQSIEKSLVSKNP-LDRRLGKRRLLALEESMEQELDWVRAFYVIRMQA.................................................................................................................................................. 164
10 -1.570PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  19  1..............................................................FYIDKGGPEAHFKRYIKEHVKGKKTGLFITLGADPAGEHGESMLKVGRELLNEGGN------EILAEFICQGAIDPKVIEEMKEMAAK................................................................................................................................................................................................. 82

FFAS is supported by the NIH grant R01-GM087218-01
1 0 8 9 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.