current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: [C] COG2441 Predicted butyrate kinase, from COG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .
# Score Template Links and tools%idFirst MISAGIDPGTGSYDVVAIEDGKVVFRKNIPTEEVRASPDVIVEVIEESGAEVAAGLSGYGLPVKRFSELDEVDLLLMTLNFDSERAIGLRNIIKAVKERNVNLYTVPAVIHLPTVPPWRKMNRIDIGTADKLCSAVLAVAKLSEEEELTKLNFILAEVGEGFNAFIAVRNGRIVDGMGGTTSFPGYSSLGAMDAELAYIIGEFPKKLIFSGGVKSFASEWKVNENEVTNILSEFVLKGIRAMEVSTDADFYMLSGRFAPDVLRKLRGEGKEVRLLGGFGRGKQSAQGAAIIANAIAGGEYREIVDYMRIFEAKGTLLDYITSDIMEYVRRGLKRRGDLast
1 -5.920tr|C9J0N9|C9J0N9_HUMAN Uncharacterized protein OS=Homo sapiens GN=XYLB PE=4 SV=1 (Range: 1-66)  ali follow..  29  9.CCLGWDFSTQQVKVVAVDAELNVFYEE..................................................................................................................................................................................................................................................................................................................... 35
2 -5.310sp|Q96LR9|APLD1_HUMAN Apolipoprotein L domain-containing protein 1 OS=Homo sapiens GN=APOLD1 PE=2 SV=2 (Range: 212-279)  ali follow..  17  2..........................................................................................................................................................................................................................................................................................RRAEGDTKVSQAVLKAKIQKLAESL---ESCTGALDEL................. 36
3 -4.630sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 (Range: 1757-1846)  ali follow..  13  13................................................................................................................DCLSEKSRLNRSSVSKEVFLSLPQPNNSDWIQGHTRKEMGQSLDSANTSFTAILSSPDGELVDVAC............................................................................................................................................................... 78
4 -4.270sp|Q96L91|EP400_HUMAN E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=4 (Range: 364-425)  ali follow..  13...................................................................................................................................................................................................................................................................................................MQALKEVFKEYLIELFFLQHFQGNMMDFLAFKK............. 45
5 -4.250tr|C9JIE5|C9JIE5_HUMAN Uncharacterized protein OS=Homo sapiens GN=EP400NL PE=4 SV=1 (Range: 199-261)  ali follow..  14...................................................................................................................................................................................................................................................................................................MQALKEVFKEYLIELFFLQHFQGNMMDFLAFKE............. 46
6 -4.250sp|Q6ZTU2|E400N_HUMAN EP400 N-terminal-like protein OS=Homo sapiens GN=EP400NL PE=2 SV=2 (Range: 352-414)  ali follow..  14...................................................................................................................................................................................................................................................................................................MQALKEVFKEYLIELFFLQHFQGNMMDFLAFKE............. 46
7 -4.170sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 903-980)  ali follow..  19  1...LVITTQGGYVKILDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGG..................................................................................................................................................................................................................................................................................... 57
8 -4.050sp|Q14571|ITPR2_HUMAN Inositol 1,4,5-trisphosphate receptor type 2 OS=Homo sapiens GN=ITPR2 PE=1 SV=2 (Range: 834-896)  ali follow..  10  5.....................................................................................................................................................................................................................................................................VEEYLKEVVNQPFPFGDKEKNKLTFEVVHLARNLIYFGFYSFSELLRLTRTLLAILDIV................. 63
9 -4.040sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens GN=ITPR1 PE=1 SV=2 (Range: 836-903)  ali follow..  6.....................................................................................................................................................................................................................................................................VEEYLRDVVCQRFPFSDKEKNKLTFEVVNLARNLIYFGFYNFSDLLRLTKILLAILDCVHVT.............. 67
10 -3.450sp|A6NCN2|KT81L_HUMAN Keratin-81-like protein OS=Homo sapiens PE=2 SV=3 (Range: 1-83)  ali follow..  1...................................................................................................................................MSCLYSRLSAPCGVRAFSCISACGPRPGRCCITAAPYRGVSCYRGLTGGFGSHSVCGGF................................................................................................................................................... 59

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.