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Query: [C] COG2441 Predicted butyrate kinase, from COG0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MISAGIDPGTGSYDVVAIEDGKVVFRKNIPTEEVRASPDVIVEVIEESGAEVAAGLSGYGLPVKRFSELDEVDLLLMTLNFDSERAIGLRNIIKAVKERNVNLYTVPAVIHLPTVPPWRKMNRIDIGTADKLCSAVLAVAKLSEEEELTKLNFILAEVGEGFNAFIAVRNGRIVDGMGGTTSFPGYSSLGAMDAELAYIIGEFPKKLIFSGGVKSFASEWKVNENEVTNILSEFVLKGIRAMEVSTDADFYMLSGRFAPDVLRKLRGEGKEVRLLGGFGRGKQSAQGAAIIANAIAGGEYREIVDYMRIFEAKGTLLDYITSDIMEYVRRGLKRRGDLast
1 -73.400RH20382A NP_341767.1 416165 Selected-2009-12-04  ali follow..  28  7MIYVGIDPGSETYAFAFVDEGNLIKYFEICTDLVEKSSIFLAKLIADYRPMAVALPSGHGLPFYNIRNINNREIFILTLDPLSHGPLRDFLLASKQYLSFYNSFTIPSVIELNSLPNDRKVNVIDKGTADKVASTFFYRVY------LKLDNFILVEMGRRFTAIVIVINGKIVDGYGGTYL-------SGLDGEIAYLLSRIDKSTVYNVGR------------------NLELTRIIVEWYSDKYKLPIIVSGYNKNYLEIGKK-----------DFKFKEAAVGAAFIANAYSGGLLRHYISML---DSSGTPISFVRLKEWDEIISWIETL.. 302
2 -36.300TM1754 TM1754 283609 Purified-2004-01-09  ali follow..  16  2YRILVINPGSSSTKVAVFEDEKKIAEKNVSHDQEPLRRKAVEDFIDEVGYSAIAARGGVLEPVPGGTYVNEYMVDYLINRSPVDHVSNLAAVIGYGKPHGIPCFVVDPVSVDEMCDEARFSGIPEIERKHALNIKAVLRKSREMGKTPEEVKIVVAHLGSGI-SVCACKNGKIIDVNNADEGPFSIERTGELPVGDVHSAAELKEEFTRKGGLLAYLGTKNRKAKLVVEAMAYQIAKEIGGMCAVEKPDAIVITGGMAHEIITDYIEKFGKVEVIPGELEMEALALGVLRVLRGEEKAMDYR................................... 353
3 -35.600TM1756 TM1756 283611 Purified-2001-12-11  ali follow..  18  2FRILTINPGSTSTKLSIFEDERMVKMQNFSHDQLEFREKIARQFVEETGYSAFVSRGGLLDPIPGGVYVDGLMIKTLKSGKNGEHASNLGAIIAHSSETGVPAYVVDPVVVDEMEDVARVSGHPNYQRKHALNQKTVAKEARMMNKRYEEMNLVVAHMGGGI-SIAAHRKGRVIDVNNAGDGPFTPERSGTLPLTQLFTYEEMKKRIVGNGGLVAYLGTSDEWAKRVYRAMAYQIAKWIGKMAAVGEVDFIVLTGGLAHEKITKRVSFIAPVLVFPGSNEEKALALSALRVLRGEEKPKNYS................................... 356
4 -14.300MJ16373B YP_002547339.1 402259 Purified-2009-08-28  ali follow..  12  28..VIGIDLGGTKILAGIARQEQIIATREEPTL--HGEDAPVLAQMARLITSLLSDAGALAQELDNV-------------------VIGVPSAVDPQTGLSSLSPNLALPVDRPLADLMSRFVSCPVTVENDVNLAAYGEAWAGAGQGLG--SLVFVSFGTGVGMGIVL-DGEPWRGAAGRAGEIAYLENGLYEVGTSGIRQRFTRDGGTVAELFSLARSGNEQARLAIDSVAKQASIGIAAVHALLDPAVTVIGGGIGSTLLQAHLQPLLESPLKQSRLGVQAGMIGAVALA............................................. 316
5 -13.300MH0032B YP_001304619.1 394516 Purified-2009-05-28  ali follow..  14  1MYTIAIDLGGTVVKIGLLSDGEIVDCVRLPSR-LALGLALNLPKIKEAIDRLLAAWRCIGLAFPGLVDPIHNRVISTNEKYDDACSISLDKWAWE--NWEVPFCM-----------------------DNDARLAVAGEWWQGAARGKN--NVVMMTIGTGIGTGVVI-DGRLLYGQHFQAGSLG--NKGCVEASFKRDADIYDFKRIFRL-----AQEGNTDALLIRNECMDIWASAIITYIHAYDPEVVILGGGILKSVDELAWCPSGKVPVVPAILGDDAALFGLEYFM............................................. 308
6 -13.000MH15495A AFE_0267 394089 Crystal|NMR-2009-04-14  ali follow..  10  5.LTIGIDVGGTNLRFGVFRNELLDSTRSEVDLREKCRQAPDPEGAAALVTTLLT---------EGIADLRRHHPNIARVGIAFPGFIDDDGVLLQSPN-------IPQLIQFDLQTAVGAACQLPVLVENDANAAGYGEFWEERQEHPELQNLLYVGLGTGVGGGWIH-QGRPWRGDHGSAMEIGHINQGCLERGVQSTYVELTGTAPDAMVIAQMAGDAHSEAASAFRMAGGYLGQVLAHVVKVTDVAVVRIGGGMSAPAMLQRLDADMNVEVKRGNDDDLAGMRGAALLA............................................. 308
7 -12.900MJ16373A YP_002547257.1 402234 Purified-2009-08-28  ali follow..  12  84..VIGMDIGATTIRVAIADAGTIVHEVEKSAGE--HGGEALLAHVSGVVEASLKKARVSRSKVLLA-------------------AVAMPGVIDPETGRLSLAPNLSEIGSLDVIKALQGIFRCDVIIENDVNAAVIGESWKGSGIGLD--SVAFVSLGTGIGLGVLF-NGKLMRGAKGAAGEIGYLERGALECGILERYGNPGDGGMTVRDILEAAEKGDAKALATVQETARLAALLVVSVHAMLDPGKIILGGNVGRRMVKEALATSTSISLEASTLASRATLVGAVAIA............................................. 374
8 -12.800MJ16339A NP_387305.1 403601 Purified-2009-09-18  ali follow..  14  84..FLGAYIGVNRIDVIAIDSGTVRAKATRPFSGAASRPAQAMELIVALVDEVRRTLPGLNVALPGFLDGDGETFHAAILG----HGVSLAQPISESIDLDVPVLL-----------------------ENDANAVAVAETYRSAPPDGKGDDSLVVLIENGVGGGIVS-NGKLHRGQLGGAGEIGHMRPGRWETALLARYAHISGVIGSLDAFIAVLASGDPTALACARDWARWLVRGLATLACVLQPGRIILAGSVSALLAASLIEGYPTPRVETSSTGNDGPALGAAYLL............................................. 381
9 -12.600MH9150B YP_807899.1 394525 Crystal|NMR-2009-07-09  ali follow..  12  1MQYLAIDVGGTTTKYGLVSTGVLSQQGEQPTM--RASLADFMASLTGLIRLHKAHVAGIGLALPGVIDSQQGLVKASAT-----EGLVLGTQLTTAADLTVPILI-----------------------ENDGNAAALAEHWRGNLAGTMNSAMVVLGTGVG----SLFLNGQLYHGSHHVAGEPSFMVTNGLTVATINAMADALGVHEEPIGVFQALTDNTSEAAVILGTFTRGVAAMIYNMQTVLDLEKVIIGGGISAQ............................................................................. 247
10 -12.400TM1469 TM1469 283327 Purified-2001-11-19  ali follow..  13  4LKLIGVDLGGTTFSVGLVSEDGKILKKVTRDTLVENGKEDVIRRIAETILEVSDGEEAPYVGI------------------------GSPGSIDRENGIVRFSPNFPDWHNVPLTDELAKRTGKKVFLENDANAFVLGEKWFGAGRGHD--HIVALTLGTGIGGGVVT-HGYLLTGRDGIGAELGHVTRGCLEAKLAGSPEKADAKHLFDA-----ARQGDRFALMIRDRVVDALARAVAGYIHIFNPEIVIIGGGISRGPLREKVVDYITYEVVASPLVEDAGILGAASIIKERIGG....................................... 317
11 -12.100MH15473A YP_678483.1 394547 PDB-2011-03-23  ali follow..  14  1.MILGIDVGGTSVKFGLVTEGEIQNATRFMTADWVNGIGFVESMKLEIGNFLKQYPIVKGVGI------------------------GWPGLVSLDRTKVILLPNIPSVVNVPIVEIRSEFPHIHFKIENDAKCAALGEYYFGENKRMQ--TFILLALGTGVGSGVMM-NGKLFIGGRGNGTEVGHMLTTRLALDVAKKSSLHTIAELSPKVIADHAAQGDALALAVWADIGTIIGESLVNIVRVMDLNNILLGGGISGPNLKKAMLEHLDMYIGKATLENDAGLLGAAGLI............................................. 298
12 -11.900MH8742A YP_001051434.1 394334 Crystal|NMR-2009-06-18  ali follow..  12  1MQILTIDVGGTTALFELQLAGH-TEQYKIPTGE-GFKIEELNNQIAALERDYDLQDYQLAIGVPGLVQ----------------------------NNRLVACKSLPGLNGLSFDTVKTQGELKFICNDMDAGMQATC--------DAKYACELLVMCGTGIGMSIAF-NGQAFTGATGVAGELGHCR--------VMTESGEFSLEQLASG--DSVRSRNITTQDDLYRAGSYLGMGLAWTVNLFNPNRIWLAGNMMNSKQMALSAPLAEMKINRVDDMETLVCRGLSAML............................................. 254
13 -11.900MH15503A NP_418508.1 394118 PDB-2009-06-12  ali follow..  16  7.VVAGVDMGATHIRFCLRTEGETLHCEKKRTAEVIAPGSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTISTPNLPLTAADLYDLADKLEN--TLNCPVEF---------------------------RDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWM-NGAPWTGAHGVAGELGHINPGCLETNCSMALRRWYEQQPRNYPLRDLFVH--AENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDETLVAMTQKYLVVRFIAASSSDFNGAQGAAILAH............................................ 297
14 -11.800MH8742B YP_001182726.1 394221 Crystal|NMR-2009-07-02  ali follow..  14  1MQTLTIDVGGSKALFELQL-AGHTEQYKIPTGE-GFKIEELNNQIAALERDYDLQDYQLAIAVPGLVQ----------------------------HHRLVACKSLPGLNGLSIDTVKTQGTLKIISNDIDAGMQALCDAKYA--------CELLVMCGSGIGMSIAF-NGQVFSGATGVAGELGHCR--------IMSESGEFRLEQLASG--DSVRSRNITSQEDLYRAGSYLGMGLAWAVNLLNPNRIWLAGGMMNSKRMALSAPLAEMKIHRVDDMETLVCRGLSVIL............................................. 254
15 -11.700FJ8752A NP_070792.1 370081 Purified-2006-11-01  ali follow..  17  1.MIVGIDVGGTNTDVAVLE-GNVFQIKSFRTSEVI---QNLSDFIEKNFGDAEAVGIGVAVWFVDGKPVKAPNLPAIP------------------MELDVPFIVDNDAN----------------------------CFAYFAAKTLNFRHLLAVTVGTGIGGGIVA-DGKIYRGRGAA----GEIGHTFVGGRKRCRCGGEGHLEAYFGGAMENVKELIDTGEIYSTAEFALFCRSLANAVMLLNPEAIALGGRIGGRLDERPLAEKVNRYLPEEIDVVYAVAKGAALLA............................................. 245
16 -11.400TM0411 TM0411 282284 Purified-2001-08-29  ali follow..  13  76..VIGVDIGGTKIDAVLTDLVGNVLNKEHILLPSNLDKRKLLELIKKVIHPFLVYERILGIGI-GIPGTVDEDHLVKRIPAFDVTDWDLKEELEK--TFGYPVFV---------------------------NANLDAFAEAKIGAGRGFRCVLLISVGWGIGSGIVY-DGKIFRGARGKAGEFGHIVTDWSKEKEIVLEKGFGHLEEWFSGFGKSPEWVFEKRHNEIKKNLEHFGVAVANAIVLFDPDVVIIKGGIGLHQFEKISAVVKDVEIRKGEIEEYGVAIGGALFV............................................. 355
17 -10.900MH1224A YP_001303002.1 394588 PDB-2010-03-29  ali follow..  9.IVMTLDAGGTNFVFSAIQGGKEIADPPACADCLDKCLGNLVEGFKAIQADLPEAPVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLED--IFGIPVFI-------------NDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVVI-DGELLRGDNAAGGYVWCLRNKK-ESVSIRAVMRVYAERSGDAGAEGIRPGNREAAIAAFEELGEMAGDALASAITLID-GLIVIGGGLSGAILPVLLKEMNAQTGMMDGARFGRLQKEVYDLDDEKS-GFARGEAVEVLVPGTNRK----VGYDPCKRIGVTFSKQG. 346
18 -10.700TM1224 TM1224 283089 PDB-2006-07-14  ali follow..  11  77..VLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKD-----------------------MMEKLGSKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKE-KYGIEVWVENDADMGAVGEKWYTKRDDSFAWILTGKGIGAGIII-DGELYRGENGYAGEIGYTEYVFLEDVCNENVVLKHVLSMGFSSLAEARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGISKIVIGGFFKKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHA............................................. 357
19 -10.700SF10724A NP_630122.1 423177 Selected-2011-01-11  ali follow..  14  81..VIGVDFGHTHLRVAVGNLAHQVLAEESEPLDVDASSDQGFDRAEQLVSRLIEATGVDRAKIAGV-------------------GLGVPGPIDVESGTLGSTAILPGWGGIRPAEELRGRLGVPVHVDNDANLGALGELVWGGGRGVR--DLAYIKVASGVGAGLVI-NGKIYRGPGGTAGEIGHINRGCLETYVLPLLQPSHGTDLTMEGVVRLARDGDPGCRRVIADVGRHIGSGVANLCNLLNPSRVVLGGDLAEGPIRESVGRYAQLSVLPGALGGRAEVLGALALA............................................. 377
20 -10.400MJ0032E YP_002547715.1 402245 Purified-2009-08-28  ali follow..  13  100..SFGVKIGRRSANLVLMDVGTIRHEVRRPGLLLDFIVGGISDIEGRLSVAERARIAGVGIAAPFELWSWAEETGAPSEEMDVWRETDLKADVAA--RIGYPVFI---------------------------DATSACAAELVFGVGPHYPDFVYFFLGSFVGGGIVL-NSSLFSGRTGTAGAVGPLKTVQLLKVLENLLRDYGQDSQSLWYSPSDWVDYGEPLEIWIRDTAAALAQAIVAAASIIDFSAAVIDGGFPQWVRQRLVVAIQEAEIVEGAVGHQARSVGGASLP............................................. 392
21 -10.200MH10724A YP_830079.1 394470 Purified-2009-03-17  ali follow..  13  96..VLAVDVGATHVIVAVTDLGGNVLAERRLAQDVADGPEAVLGRVVEEGKTLLSEAGRTAADLAGI-------------------GIGLPGPVEHATGMPVKPPIMPGWDGFDVVRYVRRSLPVPVLVDNDVNIMALG---ERTAYWPEHDNFLFIKVATGIGAGI-ISSGELQRGANGTAGDLGHVNYGCLEAAVARELARHGLPAEKGSDVLRLVAEGNLQAIQALRQAGRDVGDVLATVVNLLNPSVIVIGGSLGQAGVREVVYRRSHLRIALSMAGDQAAILGASQMV............................................. 392
22 -9.820MH3856D DHAF_12NOV03_CONTIG1083_REVISED_GENE3088 394458 Crystal|NMR-2009-05-09  ali follow..  10  32VYYTGIDLGTAYIVLAVLDENYQPVAGAYRFANVVKD--------------------GMVVDYIGAIRIVKELKQELEERLDTELVYAAAALPPGTMALDSGVI-------------------KHVVQGAGFEITNLLDEPTAANAVLKIKDGAIVDIGGGTTGITILKDGEVIYVADEPTG-------GT---HFSLVIAGAYKMSFDEAENYKQNPKNHRELTPVVGPVVEKVSSILNRHLRDYQVETIYLVGGTC---IETIIARQTGIPTYKPQNPMFVTPLGIALNCT............................................ 276
23 -9.700MJ0032B NP_790512.1 403304 Purified-2009-09-04  ali follow..  12  87..AIGVSINTDSAVVCVADGCNVLEQVTLRTPP--LSRNSTLDSLAKTIERMLQRNG-IGMGFAIAGFFLENRQINAPEPLRDWSLIDLQPVLEE--RFGMPVWL---------------------------NATTAAIGESLVGVGAWASNFIYLSFNFGFGAGVVI-NGKPYFGSHGNAGEITLYNDEES--YLLEELHQKGVQVDSIEDLRLRFDPNWPGVDTWLKRIQPTLDRLVNALAGLFDPQAVVFGGQLPAELGKRLIAATTFWRLLLSETNGDAAAIGAALVP............................................. 369

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.