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Query: [S] COG5500 Predicted integral membrane protein, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATVDNLFSILELFAVLGCGLMAGVFFAFSTFVMNALARLQPTQGIAAMQSINITVINPLFMTAFLGTGVACIILLISSLLGWHQPNAVYLLVASLLYLVGTFGVTIVFNVPLNEALAIANPDSTDGVKLWTSYLTNWTFWNHIRTAAALAASALLTIGLRYLast
1 -95.400[S] COG5500 Predicted integral membrane protein  ali  100  1MATVDNLFSILELFAVLGCGLMAGVFFAFSTFVMNALARLQPTQGIAAMQSINITVINPLFMTAFLGTGVACIILLISSLLGWHQPNAVYLLVASLLYLVGTFGVTIVFNVPLNEALAIANPDSTDGVKLWTSYLTNWTFWNHIRTAAALAASALLTIGLRY 162
2 -9.640[S] KOG4753 Predicted membrane protein  ali follow..  15  94..................................................RENWRTVLAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVYIWHLPLFT............................................... 170
3 -9.180[S] COG5528 Predicted integral membrane protein  ali follow..  16  2......LYFVLKFLHIIGASVLLGTGAGIAFFMLLAHRTGRTETVAAVARIVVIA-----FLFTATAVVLQPVTGIALAWNVGYSLAEGWILLSLLLYVVTGAFWLPVV-WMQMEMRRLAETASKAGEPLPKRYHQLFRLWFAFGFPAFGAVLAIFWLMIT. 151
4 -8.430[S] COG4325 Predicted membrane protein  ali follow..  100............VLIVVSATMITTIGIVFSLTVL-SLQIASSQFSVRLLRTFLRDVPNQVVLAIFACTFAYSTGGLHTVGEHRDGGAFIPKVAVTGSLALAFVSIAALISIQIDTIMDKVRLRTLGL................................... 221
5 -7.810[S] COG5139 Uncharacterized conserved protein  ali follow..  10  189.................VLRLREQMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPDRSLPA---------LNIQRSLMDILTKLPIQTEYTISKKPEPFIKRIADNLVSEWS-----RPIIKRSA.......... 322
6 -7.650[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  12  12...VKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGIYAGNIKP--------TPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYLEPLYNDFRKLRYM............................. 133
7 -7.300[S] COG5594 Uncharacterized integral membrane protein  ali follow..  409VHFLKFIDHMPPKLLGIITGILPSVALSILMSLVP-IKFLGKFGGALTVQEIENYCQNWYYAFQVVQVFLVTTMT-----------SAATSAVVQVIKEPASSMTLLASNLPKASNF--------------------YISYFLLQGLSIPGGALLQIVTLLL 540
8 -7.220[S] COG5523 Predicted integral membrane protein  ali follow..  17  133SVGVKLVLAYFLLIVLLIPAIIAGFRYSMAYYILNDNPDMGAYEAIVESKKMMKGNKWRLFWLTFIGWNLLSGVPLICSF.................................................................................. 214
9 -7.000[S] KOG4843 Uncharacterized conserved protein  ali follow..  738.TLAPMAVERSMTTRAAASNALRQQRIKYSISIVADKGLKKPLFTSARLKKGEVLYLET-YELCFAGEKTIKAIQASQQ-KTDSDNSLIDVFRWSRCKKPLPQKLMRSIGFPLPADHIEVLEENLD----WEDVQ--WS-----QTGVWIAGKEYTLARVHF 913
10 -6.910[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  1............MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSAMRTLF--GFLGKIDELRLVCFVKFHD-PDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGG......................... 139

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.