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Query: [S] COG3120 Uncharacterized protein conserved in bacteria, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGKELast
1 -94.100[S] COG3120 Uncharacterized protein conserved in bacteria  ali  100  1MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGKE 150
2 -10.100[K] COG1309 Transcriptional regulator  ali follow..  21  231...........................................................................ASGKFQMDYGSEPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTI........... 294
3 -9.220[R] COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis  ali follow..  21  27.............................................................................EFRVVARGGMRR---GIRLERAFWTSLKQMAENRKCTIGMLIDEIAESHANSGNLTSAI.............. 82
4 -7.880[S] COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters  ali follow..  13  53.............................................................LRREGAISLKVFLEACKEDSVEPRKCYSGKFNARISPELHALASEAAAAQGISLNQFVEQAIQHEVHT..................... 120
5 -6.820[R] COG4710 Predicted DNA-binding protein with an HTH domain  ali follow..  27  27............................................................................................SIRLSPEMEQRLNYLASHTGRTKAEIIEHGIEEMEDYYLAADVLERVRHGQEQVHSAA 88
6 -5.120[L] COG3057 Negative regulator of replication initiationR  ali follow..  12  2...........................................................................................KTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRV......... 51
7 -4.950[S] COG5502 Uncharacterized conserved protein  ali follow..  14...................HAAQQAQQWVKELAADLRWSEPSACRLLRSVLHAMRDWLPPAETADFSAQLPVLIRGIYFEGWDPSAPEHERKKRDFVLSVRNSFGYDDDVDFDVAISAVFKLLDRHISHGEITQVRNSMKKSLRELWPAD 144
8 -4.920[S] COG5626 Uncharacterized conserved small protein  ali follow..  13  5..QKQLQEELAPMDWGTIIPHAKRDAVIVVDSSLDLLSVGLA----AKDEVNQVNHWISELLIHKPTEKELTDWNDDPEREFQT.................................................................. 83
9 -4.790[S] COG1496 Uncharacterized conserved protein  ali follow..  18  118...TEVAAAHAGWR---------------------CAGVLEETVSCFADNPENILAWLGPAIGPEVGGEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQ-CTYTENETFF---SYRRDKTTGRMASF........... 239
10 -4.680[U] KOG4031 Vesicle coat protein clathrin, light chain  ali follow..  15  103..................IRKWREEQRKRLQELDAASKVTEQEWR--EKAKKDLEEWNQRQ------SEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSL.... 222

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.