current user: public




KOG2548
Query: [A] KOG2548 SWAP mRNA splicing regulator, from COG0312

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910    .  920    .  930    .  940    .  950    .
# Score Template Links and tools%idFirst MWHEARKQERKIRGLIVDYRKRAERRQYFYDKIQADPTQFLQLHGRRSKIYLDPAVAAAGDGAAIMQGQQDNLIDRFDVRAHLDHIPPVNKTNAEGADGDSELTLEERQLNYERYRILAQNDFLNVSEDKFLHQLYLEEQFGANAQLEAERNLAKKKQKTGGATIGYSYEDTGDGATIGPQPFGAASSTVIGGAAAVAKGEKGDGSEESDSDIDMDVSIDIGKLDTSQAHELNACGRNYGMKSNDFFSHLTKDADEADALRIAREEEQEKMLLSGRKSRRERRAQKERRIANRPFSPPSYAAKEDKDKKGGGKGGEKEKEEDSESRSPSPAEAGPEKITYITSFGGEDEMQPHSKITISLTKPGLTLGESCINASSGAAIAAAAASSVSYAQKVKDNLDKLKVMNESSKRNRRRSRSHSRSRSRSATVSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRSRSRSRSRSRSLSRSRSRSRSRSRSGSWKRYKARSPSYKRSRKRYSYSSRSSSGSSYRRRSRSRSPSNRRSRVKKKTTPPPVATVGGYCLNTTTTTTTSTVTAVKMFQQQQQQPPAKATPPMISYPIPARMLNVNQALTATAPVAVQPQVVEPPPPPLKRYYGRKRGNDTSSSSSSGAENSEGSDNEEQQQPQLGKRAEDSDDMELDTASERSHALQPTMSSSSSTGNQTGKYSSATETGSGHPSSGGGGRPNLRERLKRKMQNLLNRQYKADKRAEIEKTERERLQQQEREDEMRELALKLRRRRRELRHKYGTPSSGKLSDSDAESVASESQLAKSSTRRSRSRSESRRRSPPPETQHSRRSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQSRRRRQRDRSIERNREREQYRQQHQQQNERLRGRDRDREADYGHGGSGSSNRGRVVISAPPKLKKLVDYLast
1 -30.900PF09750.4; Q3KQM8_MOUSE/24-156; Alternative splicing regulator  ali follow..  46  1......................................QFLQVHGRACKVHLDSAVALAAENMMPWQGDTNNMIDRFDVRAHLDHIPDYTPP--LLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGL---QRPSEDEKKKLAEKKASIGYTYEDST................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 133
2 -11.400PF10577.4; A2ATK9_MOUSE/34-890; Uncharacterised protein family UPF0560 topsan  ali follow..  13  310...............................................................................................................................................................................................................................................................................................................................................................................................................QLPPALESSKRDQATSMSHVSSHSRPEAPGTKELMGGVHLEMMSPKGEGDLHYSTSQEFSSREELLSHEEDKSQTSFDNLTPSGTLGKDYHKSVEIFPLKRKSMEKEDYEAPGNDDYRGSYNTVLSQSLFEKQDQEGLASAGSKLTIQEHMYHVPLSPEKEQLLDRRPTECMMSRSVDHLERPT-------SFPRPGQLICCSS----VDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADQQLE----------------IGRLQAELSNPHAGIFPHPSSQIQGQPLSSQAISQQHLQEAGAREWSSQSASMSESLS--IPASLNDAALAQMNSEVQLLT---------EKALMELGGG-GRSNAHVRHSYDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDPLSLQQSHTPLQEHQQKDPRAPDSTACTQLLYLEDMDPSGSECAATSALRCLLEGSGRRSGGETTKRTSDVPLEPLASPNQRRSANDEDEDDDDDDDDQGEDKKSPWQKREER............................... 851
3 -9.260PF02956.9; Q91CY9_9VIRU/1-581; TT viral orf 1  ali follow..  28  9...........................................................................................................................................................................................................................................................................................................................................................................................................................RRRPQ---------------RRWTRRRWRRLRTRRPRRTVRRRRRRPRVRRRRWGRRRGRRRLYRRTYRK-RRKRRKKMTLKMWNPSTIRACNIRHTRAGCNYAIHSEDGGSFSTTTWS........................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
4 -8.710PF06495.6; Q9NIJ7_DROAE/1-186; Fruit fly transformer protein  ali follow..  33  5..............................................................................................................................................................................................................................................................................................................................................................................................................................................SSSRSPRDTRRRPRQREKMPY-RERDRVRNLRKLKTTQKRTPTPPPRERRSRQARSRSRSRTHS-RCQRRRSRSYVRQRSGSRHQTSSSCSRRRHSRSRSRSRTPRIITVP................................................................................................................................................................................................................................................................................................................................................................................................................................ 122
5 -8.270PF13178.1; B9I0T4_POPTR/392-511; Protein of unknown function (DUF4005 topsan)  ali follow..  19  4.............................................................................................................................................................................................................................................................................................................................................................................................................................RCLKEEKKCYSAAHTPSLSSRYFMNNGIGRHGMVGNY---AATES---------AKARVRPQSAPRQRPSTPERERGGSVAKKRLSFPVQDHGPHGNGAGIIDYSSNRSF---SQNLRSPS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 120
6 -7.870PF02364.10; BGS4_SCHPO/871-1707; 1,3-beta-glucan synthase component  ali follow..  11  5.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ANSEAERRLSFFAQSLATPIPEPVPVDNMPT-------------FTVLIPHYAESLREIIREEDQLSRDCFVKDTKILVEENAPYENDSVSEKEGTYKSKVDDLPFYCIGFKSATLRTRIWASLRSQTLYRTISGFMNY---SRAIKLLYRVENPEIVQMFGGNTDRLERELDRMARRKFKLVVSMQRYAKFTKEEYEN--------------------AEFLLRAYPDLQIAYLDEDPPEEEGAEPQLFAALIDGHSEIMENERRRPKYRIRLSGNPILGD--KSDNQNMSLPFYRGEYIQDANQDNYLEECLKIRSVLAEFEEMETDNVNPYSESARER---NKHPVAILGAREYIF-----------SENIGILGDVAAGKEQTFGTLFSRTLAQIGGKLHYG-HPDFLNGIFMTTRGGVSKAQKGLH---------NEDIYAGMNAMLRGGRIKHCEYFQCGKGRDLGFGSILNFNTKVGTGMGEQMLSRE-YLGTQLQL 474
7 -7.830PF09586.5; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  432...........................................................................................................................................................................................................................................................................................................................................................................................VSGEAIINTRAMVTGILDDWNYASRSLYSEPYPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGFRSRGTNLNIRYQNNTLLMDALMG---KYNIA----ENNPMKFGFERQAAAGKYQLYRNENALP----GFLADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFTEKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYNLGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNEKAISAVQEKGVDLTTGKRSASGTFTADKDQVLVTTIPYDKGWRVGKKVTPKAFKDA-------------LSVPVSAGTHTIQFSYLPE.............................................................................................................................................................................. 819
8 -7.770PF08648.7; Q4RPF9_TETNG/1-158; Protein of unknown function (DUF1777 topsan)  ali follow..  28  2..............................................................................................................................................................................................................................................................................................................................................................................................................................GRSRSRTPLRRDR-RRSRSGSRERRRRDRDRSRSRDRDRDRRRTRSRSPHRRRSRSPRRHRSSSNSPLRQKDRREDERKDAKEKAAKP-NFNTTKGRKTDGAVNAYAVNVSMKRKYRQYMNRKGGFNRPLDF........................................................................................................................................................................................................................................................................................................................................................................................................................... 156
9 -7.590PF03276.9; Q45QF2_SFV1/1-610; Spumavirus gag protein  ali follow..  3........................................................................................................................................................................................................................................................................................................................................................................................................AIEGDLDVQALTDLFNNLGINRDPRH-----REVIALRMTGG----GPATRYNLVTVLLQDDQGQPLQQPRWRAEGRAANPAVMFTLEAPWQDLRM---------FDNIDLA--DDTLRFGYIPGDEYSLEFISDLIGMQDAQIRGLEGQIRGLRGNLPVAGTPPPPPPSLEPAAPSPYVASAPLAPAAPVASADLGWFAGGPGPGSVDPRLARVAYNPFLPGPSDGSGVAPVQ-------ASPLLPLPPAQPVQPVIQYVHPPPINPAQQIIPIQHIRAVTGNAPTNPREIPMWIGRNASAIEGVFPMTTPDLRCRVINALLGGNLEPQHCVT--ASAIATLYVRTHGSYPIHQLAEVLRGVANSEGVAAAYQLGMMLTNRDYNLIWGIIRPLLPGQAVVTAMQHRLDQEINDAARVASFINHLNGVYELLGLNARGQSLRIPASGGQTTAGTSAGRGTRGRRSQQGT-PGRQSSGQSQQQGRRSSQGQSRQSDSSDQNVQRQSQGGNGRGGYNLRPRTYQPQRYGGGRGRRWNDQPARSDNQQRSQSQ............... 571
10 -7.550PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)  ali follow..  10  345.........................................................................................................................................................................................................................................................................................................................................................................................AVSSHDLTEHPLAGQKVLITLIATDGSGQEGRSETLEGRRFSNPLAAAVVEQRGVLALDAQNLPRVFDLHDALTIAPEETIPDLSHYLLLQSVRGRLENARSDEDLHAAIDYMWGVALQLEDGNLSLAERRLRDAQNALAEALENGATDEEIAQLMDELREAMQEF---------------------------LQELARQNQNNPASEMQQAMP---------------------------------------NMLRQRDLDNMLDQIENLARSGARDQAQQMLQELQRMMNNLQAGRQQRQQQQGGPMRQQMDKLGELMRQQQQLMDET--------------MRADRDRQSQSGEGRDRQEQGQNQPGQGQDQGQQGQGSQSLEEMLGALGRSQQELQDALG-QLQRDLEGMGINPSEGFGEAGEAMGDAAGNLQQGQTGQ---LGDQGRALQALRQGAEDMMNQMMQAMGNQQGDAEGEGPDQNGNRSADDRDPLGRPRATTGPDFGSRVQVPDEIDIQRAREILDAIRKRLGDQLSP------EVEKRY--------------------LERLLD. 819

FFAS is supported by the NIH grant R01-GM087218-01
6 2 7 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.