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Query: [A] KOG2548 SWAP mRNA splicing regulator, from COG0312

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWHEARKQERKIRGLIVDYRKRAERRQYFYDKIQADPTQFLQLHGRRSKIYLDPAVAAAGDGAAIMQGQQDNLIDRFDVRAHLDHIPPVNKTNAEGADGDSELTLEERQLNYERYRILAQNDFLNVSEDKFLHQLYLEEQFGANAQLEAERNLAKKKQKTGGATIGYSYEDTGDGATIGPQPFGAASSTVIGGAAAVAKGEKGDGSEESDSDIDMDVSIDIGKLDTSQAHELNACGRNYGMKSNDFFSHLTKDADEADALRIAREEEQEKMLLSGRKSRRERRAQKERRIANRPFSPPSYAAKEDKDKKGGGKGGEKEKEEDSESRSPSPAEAGPEKITYITSFGGEDEMQPHSKITISLTKPGLTLGESCINASSGAAIAAAAASSVSYAQKVKDNLDKLKVMNESSKRNRRRSRSHSRSRSRSATVSRSRSGSRRSGSRRRSRRSRSYHRRSRTRSRRRRRYYSRSRSRSRSRSRSLSRSRSRSRSRSRSGSWKRYKARSPSYKRSRKRYSYSSRSSSGSSYRRRSRSRSPSNRRSRVKKKTTPPPVATVGGYCLNTTTTTTTSTVTAVKMFQQQQQQPPAKATPPMISYPIPARMLNVNQALTATAPVAVQPQVVEPPPPPLKRYYGRKRGNDTSSSSSSGAENSEGSDNEEQQQPQLGKRAEDSDDMELDTASERSHALQPTMSSSSSTGNQTGKYSSATETGSGHPSSGGGGRPNLRERLKRKMQNLLNRQYKADKRAEIEKTERERLQQQEREDEMRELALKLRRRRRELRHKYGTPSSGKLSDSDAESVASESQLAKSSTRRSRSRSESRRRSPPPETQHSRRSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQSRRRRQRDRSIERNREREQYRQQHQQQNERLRGRDRDREADYGHGGSGSSNRGRVVISAPPKLKKLVDYLast
1 -30.900PF09750.4; Q3KQM8_MOUSE/24-156; Alternative splicing regulator  ali follow..  46  1......................................QFLQVHGRACKVHLDSAVALAAENMMPWQGDTNNMIDRFDVRAHLDHIPDYTPP--LLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGL---QRPSEDEKKKLAEKKASIGYTYEDST................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 133
2 -11.400PF10577.4; A2ATK9_MOUSE/34-890; Uncharacterised protein family UPF0560 topsan  ali follow..  13  310...............................................................................................................................................................................................................................................................................................................................................................................................................QLPPALESSKRDQATSMSHVSSHSRPEAPGTKELMGGVHLEMMSPKGEGDLHYSTSQEFSSREELLSHEEDKSQTSFDNLTPSGTLGKDYHKSVEIFPLKRKSMEKEDYEAPGNDDYRGSYNTVLSQSLFEKQDQEGLASAGSKLTIQEHMYHVPLSPEKEQLLDRRPTECMMSRSVDHLERPT-------SFPRPGQLICCSS----VDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADQQLE----------------IGRLQAELSNPHAGIFPHPSSQIQGQPLSSQAISQQHLQEAGAREWSSQSASMSESLS--IPASLNDAALAQMNSEVQLLT---------EKALMELGGG-GRSNAHVRHSYDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDPLSLQQSHTPLQEHQQKDPRAPDSTACTQLLYLEDMDPSGSECAATSALRCLLEGSGRRSGGETTKRTSDVPLEPLASPNQRRSANDEDEDDDDDDDDQGEDKKSPWQKREER............................... 851
3 -9.260PF02956.9; Q91CY9_9VIRU/1-581; TT viral orf 1  ali follow..  28  9...........................................................................................................................................................................................................................................................................................................................................................................................................................RRRPQ---------------RRWTRRRWRRLRTRRPRRTVRRRRRRPRVRRRRWGRRRGRRRLYRRTYRK-RRKRRKKMTLKMWNPSTIRACNIRHTRAGCNYAIHSEDGGSFSTTTWS........................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
4 -8.710PF06495.6; Q9NIJ7_DROAE/1-186; Fruit fly transformer protein  ali follow..  33  5..............................................................................................................................................................................................................................................................................................................................................................................................................................................SSSRSPRDTRRRPRQREKMPY-RERDRVRNLRKLKTTQKRTPTPPPRERRSRQARSRSRSRTHS-RCQRRRSRSYVRQRSGSRHQTSSSCSRRRHSRSRSRSRTPRIITVP................................................................................................................................................................................................................................................................................................................................................................................................................................ 122
5 -8.270PF13178.1; B9I0T4_POPTR/392-511; Protein of unknown function (DUF4005 topsan)  ali follow..  19  4.............................................................................................................................................................................................................................................................................................................................................................................................................................RCLKEEKKCYSAAHTPSLSSRYFMNNGIGRHGMVGNY---AATES---------AKARVRPQSAPRQRPSTPERERGGSVAKKRLSFPVQDHGPHGNGAGIIDYSSNRSF---SQNLRSPS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 120
6 -7.870PF02364.10; BGS4_SCHPO/871-1707; 1,3-beta-glucan synthase component  ali follow..  11  5.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ANSEAERRLSFFAQSLATPIPEPVPVDNMPT-------------FTVLIPHYAESLREIIREEDQLSRDCFVKDTKILVEENAPYENDSVSEKEGTYKSKVDDLPFYCIGFKSATLRTRIWASLRSQTLYRTISGFMNY---SRAIKLLYRVENPEIVQMFGGNTDRLERELDRMARRKFKLVVSMQRYAKFTKEEYEN--------------------AEFLLRAYPDLQIAYLDEDPPEEEGAEPQLFAALIDGHSEIMENERRRPKYRIRLSGNPILGD--KSDNQNMSLPFYRGEYIQDANQDNYLEECLKIRSVLAEFEEMETDNVNPYSESARER---NKHPVAILGAREYIF-----------SENIGILGDVAAGKEQTFGTLFSRTLAQIGGKLHYG-HPDFLNGIFMTTRGGVSKAQKGLH---------NEDIYAGMNAMLRGGRIKHCEYFQCGKGRDLGFGSILNFNTKVGTGMGEQMLSRE-YLGTQLQL 474
7 -7.830PF09586.5; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  432...........................................................................................................................................................................................................................................................................................................................................................................................VSGEAIINTRAMVTGILDDWNYASRSLYSEPYPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGFRSRGTNLNIRYQNNTLLMDALMG---KYNIA----ENNPMKFGFERQAAAGKYQLYRNENALP----GFLADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFTEKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYNLGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNEKAISAVQEKGVDLTTGKRSASGTFTADKDQVLVTTIPYDKGWRVGKKVTPKAFKDA-------------LSVPVSAGTHTIQFSYLPE.............................................................................................................................................................................. 819
8 -7.770PF08648.7; Q4RPF9_TETNG/1-158; Protein of unknown function (DUF1777 topsan)  ali follow..  28  2..............................................................................................................................................................................................................................................................................................................................................................................................................................GRSRSRTPLRRDR-RRSRSGSRERRRRDRDRSRSRDRDRDRRRTRSRSPHRRRSRSPRRHRSSSNSPLRQKDRREDERKDAKEKAAKP-NFNTTKGRKTDGAVNAYAVNVSMKRKYRQYMNRKGGFNRPLDF........................................................................................................................................................................................................................................................................................................................................................................................................................... 156
9 -7.590PF03276.9; Q45QF2_SFV1/1-610; Spumavirus gag protein  ali follow..  3........................................................................................................................................................................................................................................................................................................................................................................................................AIEGDLDVQALTDLFNNLGINRDPRH-----REVIALRMTGG----GPATRYNLVTVLLQDDQGQPLQQPRWRAEGRAANPAVMFTLEAPWQDLRM---------FDNIDLA--DDTLRFGYIPGDEYSLEFISDLIGMQDAQIRGLEGQIRGLRGNLPVAGTPPPPPPSLEPAAPSPYVASAPLAPAAPVASADLGWFAGGPGPGSVDPRLARVAYNPFLPGPSDGSGVAPVQ-------ASPLLPLPPAQPVQPVIQYVHPPPINPAQQIIPIQHIRAVTGNAPTNPREIPMWIGRNASAIEGVFPMTTPDLRCRVINALLGGNLEPQHCVT--ASAIATLYVRTHGSYPIHQLAEVLRGVANSEGVAAAYQLGMMLTNRDYNLIWGIIRPLLPGQAVVTAMQHRLDQEINDAARVASFINHLNGVYELLGLNARGQSLRIPASGGQTTAGTSAGRGTRGRRSQQGT-PGRQSSGQSQQQGRRSSQGQSRQSDSSDQNVQRQSQGGNGRGGYNLRPRTYQPQRYGGGRGRRWNDQPARSDNQQRSQSQ............... 571
10 -7.550PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)  ali follow..  10  345.........................................................................................................................................................................................................................................................................................................................................................................................AVSSHDLTEHPLAGQKVLITLIATDGSGQEGRSETLEGRRFSNPLAAAVVEQRGVLALDAQNLPRVFDLHDALTIAPEETIPDLSHYLLLQSVRGRLENARSDEDLHAAIDYMWGVALQLEDGNLSLAERRLRDAQNALAEALENGATDEEIAQLMDELREAMQEF---------------------------LQELARQNQNNPASEMQQAMP---------------------------------------NMLRQRDLDNMLDQIENLARSGARDQAQQMLQELQRMMNNLQAGRQQRQQQQGGPMRQQMDKLGELMRQQQQLMDET--------------MRADRDRQSQSGEGRDRQEQGQNQPGQGQDQGQQGQGSQSLEEMLGALGRSQQELQDALG-QLQRDLEGMGINPSEGFGEAGEAMGDAAGNLQQGQTGQ---LGDQGRALQALRQGAEDMMNQMMQAMGNQQGDAEGEGPDQNGNRSADDRDPLGRPRATTGPDFGSRVQVPDEIDIQRAREILDAIRKRLGDQLSP------EVEKRY--------------------LERLLD. 819

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.