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Query: [S] KOG4683 Uncharacterized conserved protein, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAEIKVERSHDQHLLEPKEDTSSSYTRRSLAGNRPRLASLDIFRGLTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIALSLKRISNKFEACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTMMRFCGILQRIALSYLVVALVEIFTKDSHEENLSTGRIVAASVLVIYLATLYGTYVPDWEFVVYDKDSVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDSPYEGAIRQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTGLVLLALGLTLHFTHLMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKWIGMNAMLVYVMGAEGILAAFFNGWYYRHPHNTLHVFIRVWHSRRVGVLMYVIFAEILFWGLVTGVFHRFKIYWKLLast
1 -162.000[S] KOG4683 Uncharacterized conserved protein  ali  100  1MAEIKVERSHDQHLLEPKEDTSSSYTRRSLAGNRPRLASLDIFRGLTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIALSLKRISNKFEACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTMMRFCGILQRIALSYLVVALVEIFTKDSHEENLSTGRIVAASVLVIYLATLYGTYVPDWEFVVYDKDSVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDSPYEGAIRQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTGLVLLALGLTLHFTHLMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKWIGMNAMLVYVMGAEGILAAFFNGWYYRHPHNTLHVFIRVWHSRRVGVLMYVIFAEILFWGLVTGVFHRFKIYWKL 455
2 -105.000[S] COG4299 Uncharacterized conserved protein  ali follow..  26  1.............................MSQPAARFLSLDVFRGLTVFLMIVVNTAGPGYSQLVHAPWFGFTAADAVFPSFLFAVGCSMAFAFSKPIPLNDFTVKVLRRAALIFLLGFLMYWFFVRKVDGDWALIPFSDTRVMGVLQRIALCYLLAAFAVRWLSPRL------IVALCAVLLLGYWAILMAFGDPA------------------------APLSKLGNAGTRLDLLLIGQNHLYRKDG---------------------------GFDPEGLLGTLPSTVNVLAGYLAARFLKENPGSSQAMGRMAIAGLVLILAGLV--WSPLFPIAKKLWTSSFVLLTVGIDLILLAGLAKLLEGKASNPGTYFFQVFGLNPLVLYLFSELFVVVLGMIEVGVGIYEWVGVNLFQAVMPGAFGSLLCALAYTLVCW-LLGYVMARRGVVVKL 372
3 -53.300[S] COG3503 Predicted membrane protein  ali follow..  13  2...........................PNSISNSSRLHSIDALRGLVMLFMLLDHGDPMDVASTEPALFLSRTLAHLCAPVFVFLTGLSAFLYGEKHQGRRAVSAFLFKRGLFLVALELTLVNFAWTFQ---------PTVIYLQVIWAIGLSMLALAALLWLPRP-------LLAALGVLLVAGHNLLDPLHFAPG-----------------------------------------------------------SAWHLPWAVLHDRGWIEAGDALRLRTSYPLLPWIGVIALGYAAGNWFSGATPATTRRRYLLAGGGGLLLGFILLTLMGFFNVTKYPPSLLFLALTLGIGLLLLA----WFERLDWSGRGKALVAFGGAPMFFYLLHLYLLKLLYLLALAIWGANRGDYFGFSSVP----ALWLCSILLAVALYPAVHWFAGFKA..... 373
4 -34.700[S] COG5062 Uncharacterized membrane protein  ali follow..  14  99...............VLRRKPGCCLTKKNENTFDRRIAGVTFYRSQMMLVTVTCILAVDF--RYAKVETWGTSLMDLGVGSFMFSSGTVAGRKNDI--KKPNAFKNVLWNSFILLILGFFLTKSINYQEHVSEYGMHW------NFFFTLGFMALGVFFFRRSLKKVSY------FNLATFITLLHHCLLVL-----------------------------------TPFQKWA-----------------------LSAPRTNILAQN----------REGIASLPGYIAIYFYGMYTGSVVLADRPESWKRFQRLLFPLCILLVLYLVSNFLSVGVSRRLANTPYVANVAFINMFFLTIYILIDAYLFPSSVPKLLEDANNNGLLVFLIANVLT--------------GVVNLSFDTLHSSNAKGLTIMTMYLFIIC-YMAHWLAQHGIRFRL 459
5 -19.500[S] COG4645 Uncharacterized protein conserved in bacteria  ali follow..  12  1.............MLQKTFEGGNDQRGVAHPVPTGRDTRLDVFRALCLLTIFVNHVPGQYLEYLTHKNFGFSDSAEA----FVLISGLSVGAAYSGKFLAGALTLKIWRRALALYVAHIMTSVVTL-----AIFAGGALYFGRQELIGEINIRPIVEQTEQGIVAMVLLGHQ------YNNILSMYAVLFLLLPGFLWLNAVRP-------------------------------LLFAFSATLWLAAGCFKMVPYN------------------FLDDGYWFLNPWSWQFLFVIGILCMSHVRRGGSLPRSPWLLGISVAYLAISAFWVLFSWLTGFDKT--FLSLTRLLHVLALAYILATVPVFSRLTRVGSNHPLVMIGRHSLAVFIFGTILAMAG--------------QVLLLVTDRDRIIGTIFVIGGIGLHFAYAYYLEWLKEV.... 376
6 -17.900[S] KOG0411 Uncharacterized membrane protein  ali follow..  10  87...............GNPSSYPKQSVDAPQDDEPYTSMAIDRTRFCVVIAIFASDFP------LGKSMGYGLKLMDIGVGSFVYNAGF-------------FSTRADPQRKMKNALSSFFFGMLRYLSKELLKLDVDDREF---GVHLNFFLMLGVLNLASLVINTRA------NFLLGFGMCLTHELFLKFFGLEKLI----------------------------------------------------------YSSARSSIITSNI----------EGITFLLPQMGMFLMAADISKVVFKKKNLSIIILYNAFFVAVLSIARV------YSTSCRRIHNLYFCMVIMLLHTTHG-IVFEVFSRTFKIRNLEMHRFISKYLLFILVWSNMLV--------------TLNKLLSASKDMSRCSSHALCITYLVLVFYVPCAINSKVAGKLQV 420
7 -16.000[S] COG2311 Predicted membrane protein  ali follow..  13  2..................................ERNVTLDFVRGVAILGILLLNFGLPKAAYLNPAWYGAITPRDAWLTLFALLFGAGLQMLLPR------GRRWIQSRLTLLVLLGFIHGLLF-----------------WDG----ILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLI----------------------------SDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLA---------------AQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLF....................................................... 323
8 -15.700[G] COG3594 Fucose 4-O-acetylase and related acetyltransferases  ali follow..  13  2...............LDNIRAGAKGRGSCPAGTNNRDLSFDFAKGILITLVII----GHLLQYLIYQGTDAFWLSPYFMPLFMAISGY-----LSSGAILRKSFTQGVGERAMQLLLPMLFWCTLIWTLKSAVIFPMKSLTDTL-STEVIGTYWFIWAAFISFILIRVLTTFNRLSIWIISASAIAVAFA---------------------------------------------------------------------------------------------LSITPLLKYTYPFYCLGFLFAQPIGWQNGVIWRYKWIFVVLLSIAAFICFLGWGKETYAYNNLVLISLAASAVAMQSMFQCWRLVYSTRVARFVAVQLGQSTLLLYLVQGAVFRLM------------DLIQFGEVWNLTTRITFATVLGVAIVVIAMAIRSIARNLGYVS. 353
9 -15.600[S] COG4763 Predicted membrane protein  ali follow..  14  2.................................KQKELWINQIKGLCICLVVI------------HS-WIYFNLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSNA-LHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNFVPTPWW--------------------------------------------------------------------------------------GMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLAALAVG-------------AWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMNAARWSPQVE-------LTLLLVYPFVSLFICTVAGLLVRK....... 333
10 -12.500[S] COG3274 Uncharacterized protein conserved in bacteria  ali follow..  10  2.................................TNKIDWIDNLRAVACIMVVMIHSTTYYVAQVGELNWDIANVLNSAVPLFFMISGYLF-------FGEKSAQKKHFMRIGLCLLFYSVIALIYISTLTPIDGWASLRNI--LWFFYAIIVVYLVSPLIKVKPVSGRYLAILILLLAVVANPQTSKFSLDDFRLLPANLYIYGD--------------------------------------------------------------------------------TFYYLLYALLGRAMGMLETQGRMISWGAALLFVVSVICIAISTEKQTRINGSFADTFYMYC------SPLVFIAAVSLWVWFKNCLNQHIAWLSGLARHSLAIYGFHALIIHFI--------------RTHHYDFTAYPVLDILYVFALTLGLSTLLSMGLQRIDRRRWV 329
11 -9.210[D] KOG3004 Meiotic chromosome segregation protein  ali follow..  13  24.VPNGLDGSVVDPTIADPTAITARKRRPQVKLTAEKLLS----KGLPYVLRIRISSKKNSYDNLSYQLW-----AHELFPKAKFKDFMKICQTVGKTDPVLREYRVSLFRD........................................................................................................................................................................................................................................................................................................................................................ 135

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.