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KOG3378
Query: [C] KOG3378 Globins and related hemoproteins, from COG0312

Results of FFAS03 search in COG0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFNCSISLIILFAVLSTVAGDRGICAQEKLDLESCAQPHKEYIHSLSDVTGREIHNPKFMKKFVEFTKTASSCIGSNVTCDASRHYRFFLDSLTNMGNILYQESNLDCLKNIAPTFRFCYRQARMTYNTLVDVSRIVRKMTKFTDCLRKELVARNVCTRDSVKNINVAVKIIRNLVRQYEKWTNGEMVPMPDLRAEMPATCPFKGNPPSGPQSPAVQSPLFGRFQKKISNFSIFILFSSVSDLNNPDAKIKMRQEMDRITERQKHIFTETFPVIFKEYKRNGLVLFAKYFSEFPHYKNIWPQFRTLQDSALLASNELANHCSVYMSGLKVLast
1 -122.000[C] KOG3378 Globins and related hemoproteins  ali  100  1MFNCSISLIILFAVLSTVAGDRGICAQEKLDLESCAQPHKEYIHSLSDVTGREIHNPKFMKKFVEFTKTASSCIGSNVTCDASRHYRFFLDSLTNMGNILYQESNLDCLKNIAPTFRFCYRQARMTYNTLVDVSRIVRKMTKFTDCLRKELVARNVCTRDSVKNINVAVKIIRNLVRQYEKWTNGEMVPMPDLRAEMPATCPFKGNPPSGPQSPAVQSPLFGRFQKKISNFSIFILFSSVSDLNNPDAKIKMRQEMDRITERQKHIFTETFPVIFKEYKRNGLVLFAKYFSEFPHYKNIWPQFRTLQDSALLASNELANHCSVYMSGLKV 330
2 -17.900[C] COG1017 Hemoglobin-like flavoprotein  ali follow..  10  2..................................................................................................................................................................................................................................................................LDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNM----------SNQRNGDQREALFNAI.. 61
3 -8.100[C] KOG3458 NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit  ali follow..  14  17VQELNLSSAALRAGAFHLGKQ---CEQANNEFMLCRQELDD-------------------RACLAEGKAVTSCA------------------------DFFRKVKKTCHEEFTQ-YATCLDK----SSGTMAFSHCRKTQGVFDKCIKDNF................................................................................................................................................................................... 118
4 -7.120[S] KOG4695 Uncharacterized conserved protein  ali follow..  13  50..SCTQELQALFGCLKKWEFDDVPCSKQHTLYMDCVHKGAEEAAAYRDATRKGTLGESGAGGKQSMTSAQFNKIQKLF--PQPDLGKQPYRQMKRLPTQDYADDTFH............................................................................................................................................................................................................................... 152
5 -6.930[R] KOG3612 PHD Zn-finger protein  ali follow..  761..TTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAE---QQAVDETKKKQWC----ANCKK--------------------EAIFYCCWNTS----YC------------------------YPCQQAHWPEMKSCTQSATAPQQEADAEVNT--------KSSQGSSSSTQSAPSETASASKEKETSAEKSKESGSTLDLSGSRETPSSNKSSWSSSDEKRGSTRSDHNTSTSTKSLLPKESR-LDTFWD.......................................................... 995
6 -6.740[R] KOG0490 Transcription factor, contains HOX domain  ali follow..  13  2.....................MVHC-------AGCERPILD--RFLLNVLDRAWH------------IKCVQC----CECKTN------LSEKCFSREKLY------CKNDFFRRFTKCAG-----AQGISPSDLVRKARSKVLNCFT------MVCN----KQLSTG--------EELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL.............. 244
7 -6.660[T] KOG1701 Focal adhesion adaptor protein Paxillin and related LIM proteins  ali follow..  12  442.FTCIICNNKLRGQPFYAVEKKAYCEPCYINTNVCSKPIMERILRATGKAHRSLDGIPFTVDAGGLIKFAPRC----SVCKEPIMPAPGQEETVRI-DRDFHVHCYRCED--------CGGLLSEGDN-----QGCYPLDGHILTCNSARI--RVLTA............................................................................................................................................................................ 606
8 -6.130[K] KOG4577 Transcription factor LIM3, contains LIM and HOX domains  ali follow..  20  1.......................MM-------QSATVPAEGAVKGLPEMLGV-------------PMQQIPQCAG----CNQHILDKFILKVL----DRHWHSSCLKC--------ADCQMQL----------ADRCFSRAGSVYC-FFKRFG-TKCT............................................................................................................................................................................ 90
9 -6.010[O] KOG4400 E3 ubiquitin ligase interacting with arginine methyltransferase  ali follow..  15  82........................CRQQGHIVQDCPEA-----------------------------DNVSICF----RCGSK------------------EHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCCSSVHHLAKDCDQVNKDD...................................................................................................................................................................... 173
10 -5.840[O] KOG0320 Predicted E3 ubiquitin ligase  ali follow..  18  261..........................................................................EELYKCPI-------------------------CMDSVEPVSTKC-------------------------ECIETAIRATHKCP------ICNKKLTARQFFRIYL...................................................................................................................................................... 319

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.