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KOG2861
Query: [S] KOG2861 Uncharacterized conserved protein, from COG0312

Results of FFAS03 search in COG0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRSVDVYVKTLGPPVRSILYSIFTSQQKPSSLPSLPFHFSLRSSSNIPTRCFSNVVAKSNSPIYDFQGFRNLFTERAISSSTTTPVASAQPQQLQNQNQHPAEVDEEISMGLEDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSRMTNYVVLKFGNHSDPTDTTRGRISGSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWMEVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISMEIAISFYNMSRASLLast
1 -117.000[S] KOG2861 Uncharacterized conserved protein  ali  100  1MMRSVDVYVKTLGPPVRSILYSIFTSQQKPSSLPSLPFHFSLRSSSNIPTRCFSNVVAKSNSPIYDFQGFRNLFTERAISSSTTTPVASAQPQQLQNQNQHPAEVDEEISMGLEDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSRMTNYVVLKFGNHSDPTDTTRGRISGSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWMEVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISMEIAISFYNMSRASL 402
2 -80.200[S] COG1723 Uncharacterized conserved protein  ali follow..  15  4.........SNDDQPERHALLHNDIQTSNNSRPS--LVQKKYLPTPQDTRKSRASYTGSAMINPTSKQSRTGSGAQRTSRTAQKLKLLPEEPFQRDSERLTDLKARRDAEKLGKAHRHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHWRGDKRFEDEDVIRLDDEGGEIIVSDKHPDLFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAEEDIQVEEFNYYVTKSYQPRIYNDFITLRDGSYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVDML 426
3 -7.940[NU] COG2064 Flp pilus assembly protein TadC  ali follow..  112.....................................................................................................................................................................................................................................................................FYITNVRRGKIDSSLPHAVNMMLGMAKGG---VPLISIFRFVAENREIFGEISREFDKIVTLVEIFGSEKLKVFLENFINVYEGGGDVEYLRAKSEQLLTERETYYTLFFETLQVYAEIYLALFIVAPLFFLIVLVVFQMV 265
4 -7.330[P] COG0598 Mg2+ and Co2+ transporters  ali follow..  13  25...........................................................................................................................................................................................EPVIWFDLFNPSSEETRLVEERLGIAIPTRDEMQEIELSDRLYQDGAEFMTMTATAKLDSDYPAKVPVTFILKGAVMLGLLEAMIDRTADALERAGNDVDQ-EQIGQKGDLLTVIRESLVSIGRLVAYHVAIEGSTPRKAAKESRQRIKLVQRDAASLGDHALFLSNKINFLLDATLGLINLEQNQIIKIFSVAAVVFLPPTLVASIYGMNFEVM 296
5 -6.860[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali follow..  237.........................................................................................................................................................................SAATGGLADDHDVFHFLTTSLH--QVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIEMRDGMNQVKQGITHVGQRLAAPQGAAQVANNCVGVTLFLSVTVVQLLLVFIYNVFK.. 501
6 -6.740[S] KOG3156 Uncharacterized membrane protein  ali follow..  58...................................................................................................................................................................................................................................................MTDAIRGGVNHVSQDLAKREKLTQLSYQQRVDFAKLRDQLLSADRSEFHNI-QNEYESVKNDLEKLRNKLREEITKTNA------KLDLSLEKGRIREESHHDLQIKEIDTKIE---QEVTNMKMQIDSVKTQVMQWLIGVCTGFALVLAYMRLL.... 206
7 -6.500[P] KOG2662 Magnesium transporters: CorA family  ali follow..  10  111.......................................................................................................................................................................................IITAEEVILMNARDASVVQYQSELCKRLQSNHNLNVKDDLPFEFKALELVLELSCLSLVLDELATNISTLNLEHVRRLKGRLLTLTQKVQKVCDEIEHLMDDDDDMAEMYLTEKKERAEAHASEELEDNIGEDFSLLSSSSIGENIDQLEMLLEAYFVVVDTLSKLSSLKEYIDDTEDLINIKLGNVQNQ----LIQFQLLLTAATFVAAIFAAVTAVF 376
8 -6.200[U] KOG0862 Synaptobrevin/VAMP-like protein SEC22  ali follow..  63..................................................................................................................................................................................................................................................YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKRNLGSINTELQDVQRIM---------------VANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTKLAAVAVFFIMLIVYVRFWWL... 215
9 -6.180[B] KOG1973 Chromatin remodeling protein, contains PHD Zn-finger  ali follow..  11  1..................................................................................................................................................................................................................................................................MSSAIYLENYLDGIHDLQTGLESLPTELERNKLMRKLDDRAQTAMKSIDSHAKDFMRKLGENGAMSEDERRERQEDIKALFGKAKEYS------DDKVQLAIQTYELV-----DKQIRRLD....................... 125
10 -6.150[O] KOG0800 FOG: Predicted E3 ubiquitin ligase  ali follow..  130LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPVVNHRGVSSQPESQPVNHINDGHEQQCDQDVEGFKEMEEDERNNIGTSSACCSCRTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFGFMKDDFVYFAIVDDVFKKFLEKLRDELKEANKKNSRGSFSGSISFSNV----------------------QDQIVRRLIA-----SLEFDHTCLPLSSPSIDGAEQSYASNSKAPLLGRSDKKKGRDHAHSLRGIE----------------EEHRKSNDRGNVTECSNASSESATYVPRRGRS--GGSQSIERKW-IVLAIDIAICLTLLGVWL... 497

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.