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Query: [G] COG4282 Protein involved in beta-1,3-glucan synthesis, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKNSFSSMANSVTSFFQSLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNASQTGLLNDSRANSVTNLPNSSNTSQVGLNNISPAPVGYVPGSKTNELANNSMEMQEISPNGSASLPPPVSESWRRIDRWAEENYYELYCQLCYGATVADVDSLEYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEIEEESELWRRVAQSYAEATLAGKIDQAVASRQASFPPGAVQCVYAHPGWIPLAKDFVGNNIAIDLAPGPAGQWGQVILFGRDQDTKYVVARSWADFLAIVAYDMENGKWLVDEDDNSLRLIYGPPREQWSYLDILKYRARKAERRKFKKRDGKRTTRPIPKSIAKEDVTNSANSTAPSTGTTVLDDGLDNNYEDIPLYGPSKDEELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSNPVSATTVEAVTTTADNKDEEKNDHVTEDVSQNSTIAEASSLQAQEEEKEIETTSVKQELast
1 -143.000[G] COG4282 Protein involved in beta-1,3-glucan synthesis  ali  100  1MSKNSFSSMANSVTSFFQSLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNASQTGLLNDSRANSVTNLPNSSNTSQVGLNNISPAPVGYVPGSKTNELANNSMEMQEISPNGSASLPPPVSESWRRIDRWAEENYYELYCQLCYGATVADVDSLEYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEIEEESELWRRVAQSYAEATLAGKIDQAVASRQASFPPGAVQCVYAHPGWIPLAKDFVGNNIAIDLAPGPAGQWGQVILFGRDQDTKYVVARSWADFLAIVAYDMENGKWLVDEDDNSLRLIYGPPREQWSYLDILKYRARKAERRKFKKRDGKRTTRPIPKSIAKEDVTNSANSTAPSTGTTVLDDGLDNNYEDIPLYGPSKDEELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSNPVSATTVEAVTTTADNKDEEKNDHVTEDVSQNSTIAEASSLQAQEEEKEIETTSVKQE 504
2 -19.400[P] KOG4408 Putative Mg2+ and Co2+ transporter CorD  ali follow..  17  94.............................................................................................................................AAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKY------------------------------------LPLTHTGLSQYIAVEAAEGR--NKNEVFARNPAAIDMFIIGATFTDWFTSYVKNVVSGGFPIIRDQ......................................................................................................................................................................................... 267
3 -7.510[R] KOG1777 Putative Zn-finger protein  ali follow..  1MSSSSSPFFHPPPQQVMDDTTQQSPSYSQNSNSPSQHTFESMEPAAGGSTSMRYSPSGSSEADNPTLGLFSAQASYPYSLRKRRPCLTKDEDLCFPITAATADETPQPTMKKFKLECLSPGEARDFSIED-----ESGTNLEAKMETTECEPEEEEAVEEEDQQDHINRLPEELLLK---------------VFSFLPDKSLLACSSVSYRFNQISNS-------------------------------HEVWIPLFHPSHAKFEFREQSRWRDGNPGVHVM--NLRSVNYRCFDQIEKAQSFLEEDLHTGVHEPIDT.......................................................................................................................................................................................... 299
4 -6.070[S] COG3753 Uncharacterized protein conserved in bacteria  ali follow..  17  74....................................................................................................................................SVADSWVGQNQPINANDLGSAIGPQVIREIAQRTGMDLPGIVDKL----NGQ................................................................................................................................................................................................................................................................................................................................ 136
5 -5.990[S] COG5373 Predicted membrane protein  ali follow..  19GGRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPS-----------------------------------EAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGRWPVWVGGLALALGGYFLVQYSIEAGL-LSPAVRLTL-------------AAIFGLALGVAGEVIRRRD-------------------------------VPAIADRFRNAMIPGVLTAAG-TVGLSLLHGQ-GLLASLLFVSSGEPRPWVLF-GFLAVAWLATLAASR.................................................................................................................................................................................................. 286
6 -5.790[S] COG3286 Uncharacterized protein conserved in archaea  ali follow..  12  50............................................................................................................................KDEIREAIRAIREAHKRVRGRLYPD-RQGLYTYYPDDIFREASANVSLQILLRTLELLGERVELKDEYLKTS---MPWKEIVELVKRLSDVIAE-----------------------------------ISLQTTRQIREVVAPVSIVYNLDPEEVLEMLKEDKFKYELIKNKEQALELLLKHLEEGDEDRGDQEGA....................................................................................................................................................................................... 216
7 -5.770[S] COG4983 Uncharacterized conserved protein  ali follow..  12  1..............................................................................................................................................................MRDGSSV---RLPPELLPYLEQKPGSPKPAKMPYSANGGRADTTNP--ATWSDYPTAVRALASGQYAG---------------------------IGFVFAENDPFFVIDLDGCRDATTGELSAEAAA----------TRMFPNAAWELSQSGE................................................................................................................................................................................................ 120
8 -5.710[S] COG3826 Uncharacterized protein conserved in bacteria  ali follow..  11  2...........................................................................................................TGLRTATPGAIDTSGTSGAPIDTFWRAVEDALNDAGNALLPGLLTPGACDALAALYPRFAYPLPGLIEHLRTQ------------------YPRLAPIANRWNQAMGIDVRYPAAHADFLRRCHDAGQLRPTP-NCLHQDLYGEHVFPLADFTGGEFVMTEQRPRMQSRKGDAAVFAVSQRPVQGARGPYRVTMRHGVSRLRSGQ................................................................................................................................................................................................ 238
9 -5.420[U] KOG2221 PDZ-domain interacting protein EPI64, contains TBC domain  ali follow..  118................................................................................................................................GRAWQYLSG-KLQQNPGKFDELMSPGDPKWLDVIERDLHRQFPFRVLKAYTLYRPEEGYCQAQAPIAAVLLMHMPAEQAFWQICEKYLPGYYSEKLEA--QKVSPVAHKHLSRQKIDPLLYMTEWLPWSS--EGVKIIFRVG--------VLLKHALGSPEKVKACQGQYETIERLRSLSPK----IMQEAFLVQ-------------EVVELPVTERQIEREHLIQLRRWQETRGELQCRSPPRLHGAKAILDAEPGPRPALQPSPSIRLPLDAPLPGSKAKPKPPKQAQKEQRKQMKGRGQLEKPPAPNQAMVVAAAGDACPPQHVPPKDSAPKDSAPQDLAPQVSAHHRSQESLTSQESEDT........... 506
10 -5.180[K] COG2002 Regulators of stationary/sporulation gene expression  ali follow..  16  1.........................................................................................................................................................MKATGIVRRIDDLGVVIPKEIRRTLRIREGDPLEVDRDGEVILKKYSPISELGDFAKEYAEALYDVAGSSKKDYTNKSIGDMIESAMNDRKSIVHTDAGEYNLVGEQQEELKGCVIAPANGDPIGAVVIFNKDEQVEQKLAETAASFLARQMEQ..................................................................................................................................................................................................... 179

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 5 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.