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Query: [C] COG2864 Cytochrome b subunit of formate dehydrogenase, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKIEISNDTRIIRHRTPARISHWMLVICFFMTMFTGVAFFFPDFAWLTEILGTPQIARAIHPFTGILMFFAFIYLALLYWDHNIPEKNDIRWAKGVIEVLKGNEHAVADNGKYNLGQKMLFWTLNLAMVTLLVTGIIMWRQYFSHYFSIPVLRIAILLHSASAFMLFTGILVHIYMAFWVKGSIRGIVEGWVTVRWAKKHHPRWYREEVLSKLEEDLLNEQSGKVGKTKVLFKGFGKLast
1 -105.000[C] COG2864 Cytochrome b subunit of formate dehydrogenase  ali  100  1MSKIEISNDTRIIRHRTPARISHWMLVICFFMTMFTGVAFFFPDFAWLTEILGTPQIARAIHPFTGILMFFAFIYLALLYWDHNIPEKNDIRWAKGVIEVLKGNEHAVADNGKYNLGQKMLFWTLNLAMVTLLVTGIIMWRQYFSHYFSIPVLRIAILLHSASAFMLFTGILVHIYMAFWVKGSIRGIVEGWVTVRWAKKHHPRWYREEVLSKLEEDLLNEQSGKVGKTKVLFKGFGK 238
2 -44.000[C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)  ali follow..  13  47..KTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPV--------ALMVQVHTWCGFALLAFWVGFVRVNFSGLVTRCIRQTRFYLFGIMKGEAHFVATEQNKFNPLQQLAYLAIMYALVLLIITGLLCLYPQV-----AGLGPVMLVLHMALAIIGLLFICAHLYLCTTPGQIFRSMVDGYHRTAPRGDKSAV.................................. 254
3 -29.200[C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit  ali follow..  17  2..QQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNVWRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDTVISTMVNGY.............................................. 221
4 -18.500[C] COG3658 Cytochrome b  ali follow..  16  2........KNKTKVWDFPTRLFHWLLAASLPFMWYSA----------------TGGDMLQWHTRVGLFILFLLVFRLCWGIWGSDTARFSVRGWSGIREYMKNGIPEHVQPGHNPLGALMVV-ALLAAVSFQVGTGLFAADENLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYKNLVLPMITGF.............................................. 183
5 -16.800[C] COG3038 Cytochrome B561  ali follow..  16  4........KGTAERWDWMSQALHWLIAVLILGLGIGGLIMG-------LPKTPNYFWVYTAHKSTGISVLALAVLRLL--------------W-----RLYVGAPKPIAGPPVWQRVANATHIMLYVLIFTIPLAGWLYDSAYWFGLFEMPALGVALEIHKLSFWALIGLVVLHAGAAF--------------------YHHLIQRDATLARMLPRNWFSSKS............... 188
6 -11.300[S] KOG4783 Uncharacterized conserved protein  ali follow..  10  27LNNAELVSNVKKRRAEYLVERMQRLLLFLTVFLLFPVVIFVIFKFLIMEPLYGNSDDNVGIGSGVATVIVMHVLVTGYILRLIFLQEISSME---------KLEWEVLMPPNTQIHGSVFIVLLLMSYCSLIIGFPIATFFALKFVVLKSYAHINADIISTICTVVAVAAVGFYIYRAIYAKSV...................................................... 202
7 -10.100[P] KOG3733 Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins)  ali follow..  403........................FLNLWYVMIVVNDALIIIGTVAKISIEF--QDFDNSLFTLTSIFLGMGALLVYVGVLRY-------FGFFSQYNILMLTLKRSAPNIMRFMTCAIVLYAGFLIAGWVILLNGDDMFATFYTINDSNTVIKVFGTVYIYLFVSLFIYVVLSLFIAI-IMDAYEVVKD-RYSDGLRAIEKRGCLRDFVESNPPPSELGSPTTRSAYAPS....... 618
8 -8.910[I] COG3000 Sterol desaturase  ali follow..  13  16.........EQLVPGWKLPKVSTWVARVIFLNIVQVSIALLAGITWNKWMMGHSLLHTSDALPPLLAGFAAYFVNTFVTYWWHRARHANDTLWRLFHQLHHAPQRIEVFTSFYKHPTEMVFN-SLLGSFVAYVVMGI------------------IEAGAYYIMFAALGEMFYH--SNLRTPHVLGYLF---QRPEMHRIHHQRDRHE.............................. 191
9 -8.490[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains  ali follow..  12  228........GAIVARHMKQ--YAHIALQTTGFLLGLTGVIC-------LVLENRLKANNVSKHKGLGIILVMGVLQMLALLARPDKQSKYRKYW---------------------NWYHHNIGRLLIILAISNIFYGIHL-----------AGTSWNGGYGFAVAVLALTAIGLEVRKFLKKNWKKKKKEMLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSDMKEK....... 419
10 -7.870[S] KOG0858 Predicted membrane protein  ali follow..  12  7..............YRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRVFSKLQLWRCMTSLFVFPISSNTAFHFLI----------NCFFIVQYSSKL--------EKDQYSRSPADYLYLLIVSAVLANIGGMIFNVYFLAMYLPWVLAAFEFIFHFSLA--LVGIFVGHVY--YFFKFQYSQDLGGT-TPQFLKR----LVPDVSGGFGGFGLPPESRAPPRQATESPWGRGM 240

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.