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Query: [S] COG1723 Uncharacterized conserved protein, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVDSNDDQPERHALLHNDIQTSNNSRPSLVQKKYLPTPQDTRKSRASYTGSAMINPTSKQSRTGSGAQRTSRTAQKLKLLPEEPFQRDSERLTDLKNQEVYSQVNRIKDKPARRDAEKLGKAHRHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFDECLYTPFIYNDWRGDKRFEDEDVIRLDDEGGEIIVSDKHPDLFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAEEDIQVEEFNYYVTKSYQPRIYNDFITLRDGSNYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVDMLASQHLast
1 -143.000[S] COG1723 Uncharacterized conserved protein  ali  100  1MVDSNDDQPERHALLHNDIQTSNNSRPSLVQKKYLPTPQDTRKSRASYTGSAMINPTSKQSRTGSGAQRTSRTAQKLKLLPEEPFQRDSERLTDLKNQEVYSQVNRIKDKPARRDAEKLGKAHRHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFDECLYTPFIYNDWRGDKRFEDEDVIRLDDEGGEIIVSDKHPDLFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAEEDIQVEEFNYYVTKSYQPRIYNDFITLRDGSNYMVKLSISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVDMLASQH 430
2 -95.300[S] KOG2861 Uncharacterized conserved protein  ali follow..  15  3.....RSVDVYVKTLGPPVRSILYSIFTSQQKPSSLPSLPFHFSLRSSSNIP-TRCFSNVVAKSNSPIYDFQGFRNLFTERAISSSTTTPVASAQPQQLQNQNQHP---AEVDEEISMGLEDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSR----------------MTNYVVLKFGNHSDPTDTTRGRISGSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWMEVGRDFIRLQFLN-TDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISMEIAISFYNMSRASL.... 402
3 -7.060[R] COG0535 Predicted Fe-S oxidoreductases  ali follow..  11  9...................................................................................................................................................................................................................THVDFNLTNG---NLACSHCHSASGPKLDNELKTEEILQTIDA------------LHIIGALKIAFAGGEPFIRR---DIFN--ILSHACSLPGWGISVITNGFY-LNSLTVEKLKAQCPNLSINISVDGSTPAGYSTL--ERVLSGIDNVVRSGMSNSVNFTITKATLHDIEATYELVVDRIGADN-----MVAIKFFPG.................. 197
4 -6.460[NU] COG1459 Type II secretory pathway, component PulF  ali follow..  13  253..............................................................................................................................................................................................................................................................................DDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEI----------TKGTADNAIVEETIENAKNVVISGDQMSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMF.... 398
5 -6.310[F] COG0519 GMP synthase, PP-ATPase domain/subunit  ali follow..  16  94........................................................................................................................................................................................................................GVADPEEKR--KIIGRTFIEVFDEEATKLQDVKFL----AQGTIYPDVIESAGAKTGKAHVIKSHGLPEDMQFELVEPLRELFKDEVRKIGLELGLPYDMVYRHP--VRILGEVKKEYADL-----LRQADHIFIEELRAFDWYHKTSQAFVVFQPVKSVGRRYAWVVALRAVETIDFMTARWAHLPYELLEKVSNRIINEIAGI......... 301
6 -6.260[E] KOG3216 Diamine acetyltransferase  ali follow..  13  1.................................................................................................................................................................................................................................................................................MGSVRIRSVIKEDLELAEFEKCEDQVEATIPNLEVAFFIDEVTPVAYGVFIEENDQPAGMAIYFLNFSTWTSRVGIY-----LEDLY------VRPQFRGKGYGSYL------LSYLARESLRIGGRRLDWVVL....................... 126
7 -6.220[S] COG3274 Uncharacterized protein conserved in bacteria  ali follow..  11  2...............................................................................................................................................................................................................................................................TNKIDWIDNLRAVACIMVVMIHSTTYYVTRGAQVGELNWDIANVLNSASRVPLFFMISGYLFFGEKSAQKKFMRIGL--------------CLLFYS------IALIYISTLT---------------IDGWASLRNILQKPVFYHL-WFFYAIIVVYLVSPLIKVKPV...... 139
8 -6.180[NU] COG2064 Flp pilus assembly protein TadC  ali follow..  10  119...................................................................................................................................................................................................................................................................................RGKIDSSLPHAVNMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIF-----GYDMITAMKYVAD---PSEKLKVFLENFINVYEGGGDVEYLRAKSEQLLTERETYYTLFFETLQVYAEIYLALFIVAPLFFLIVLVVFQMV.... 265
9 -6.170[P] KOG2716 Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain  ali follow..  18  2...............................................................................................................................................................................................................................................................................SEAVKLDVGGTIFKTSKLTKFDGFFRTMLGS--GIGLNVDESGCIFIDRS------PKHFDLILNF-MRDGCLALPK---NERDLTELMAEA-QYYLLDGLIDRLASSNW................................................. 100
10 -6.130[M] COG2853 Surface lipoprotein  ali follow..  12  44......................................................................................................................................................................................................................IFTFNDTLDTYALKPLAQ-GYQKVTPNFVQDGVHNFFNNLGDVKNLANNLLQAKFHNVDTSRLLFNSTFGLAGLIDVATPM--GLQRNDEDFGQTLGYWG-VGSGPYVMLPFLGP--TLRDAPAKIPDIYVSPYHYMDDVRARNVMFGIN----VDTRANLLKSEKLISGDKYIFIRNAYLQNREFKVK........................... 226

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.