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COG0410
Query: [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component, from COG0312

Results of FFAS03 search in COG0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSFDKVSTYYGKIQALHDVSVEVKKGEIVTLIGANGAGKSTLLMTLCGSPQAASGSIRYEGEELVGLPSSTIMRKSIAVVPEGRRVFSRLTVEENLAMGGFFTDKDDYQVQMDKVLELFPRLKERYEQRAGTMSGGEQQMLAIGRALMSKPKLLLLDEPSLGLAPIIIQQIFEIIEQLRREGVTVFLVEQNANQALKLADRAYVLENGRIVMHDTGAALLTNPKVRDAYLGGLast
1 -111.000[E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component  ali  100  1MLSFDKVSTYYGKIQALHDVSVEVKKGEIVTLIGANGAGKSTLLMTLCGSPQAASGSIRYEGEELVGLPSSTIMRKSIAVVPEGRRVFSRLTVEENLAMGGFFTDKDDYQVQMDKVLELFPRLKERYEQRAGTMSGGEQQMLAIGRALMSKPKLLLLDEPSLGLAPIIIQQIFEIIEQLRREGVTVFLVEQNANQALKLADRAYVLENGRIVMHDTGAALLTNPKVRDAYLGG 233
2 -73.400[R] COG1137 ABC-type (unclassified) transport system, ATPase component  ali follow..  32  3ILTAENLAKSYKSRKVVSDVSLTVNSNEIVGLLGPNGAGKTTTFYMVVGLVRQDQGKIVIDGEDISLLPMHNRAQRGIGYLPQEASIFRRLTVYENLMAVLEIRKDLTPQQRREKADELIENISHIRDNLGQALSGGERRRVEIARALAANPKFILLDEPFAGVDPISVSDIKKIITDLRNRGLGVLITDHNVRETLDVCERAYIVGAGKIIATGTPEQVMNDEQVKRVYLG. 236
3 -64.200[E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component  ali follow..  33  1MLKLASISKRFGGLSVLQDVNIEVPQGTIFGLIGPNGAGKTTVFNLITGLLEPTGGTLTFGGTSLVGKKPHQITQMGIARTFQNIRIFKEMTLLENVVVGGYRAAERRARDRALELLSWV--LDHKAGDIADNLSYGDQRKLELARALATEPKLLLLDEPVAGMNTGEKVDLMAEIENIRARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAEGPPEAIRNNPQVIEAYLG. 248
4 -54.700[O] COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component  ali follow..  22  1MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVRDS--YHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQA------LAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA..................... 205
5 -52.400[R] COG4674 Uncharacterized ABC-type transport system, ATPase component  ali follow..  27  5ILEIQDLTVSFDGFRALNHLTFSMNPGELRVIIGPNGAGKTTFLDVITGKVQPTEGRVLFQGKDIRKIPEYRIARLGVGRKFQTPRVYLNLTVAENLDLAVMGQATGAEQRSVGGLLETI-GLTPKAHLAAALLSHGEKQRLEIGMLVAQSPTLLLVDEPVAGLTDEETENVGDLLLAL-AESHSIIVIEHDMEFVRQIARKVTVLHQGSVLCEGNMDQIQNDPKVIEVYLG. 244
6 -52.100[E] COG1126 ABC-type polar amino acid transport system, ATPase component  ali follow..  31  1MINFKNVSKHFGKIQVLHDINLNITQGEVVVIIGPSGSGKSTLLRCINKLEVITRGQLIVDGLDVNSPNIDRQIRLEAGMVFQQFYLFPHLTALENVAFGPTKVRGTSKEEAKKQALALLSKLEDRAHHYPAELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLTVMKDLAEEGMTMVIVTHEVGFAQKVASRLIFIDKGRIAEDGDPDSLISNPPSERL.... 232
7 -51.600[CP] COG4555 ABC-type Na+ transport system, ATPase component  ali follow..  26  1MITLTDCSRRFQDVKAVRDVSLTIEKGEVVGILGENGAGKTTMLRMIASLLEPSQGVITVDGFDTVKQPAEVKQRIGVL-FGGETGLYDRMTAKENLQYFGYGLNRHEIKARIEDLSKRF-GMRDYMNRRVGGFSKGMRQKVAIARALIHDPDIILFDEPTTGLDITSSNIFREFIQQLKREQKTILFSSHIMEEVQALCDSVIMIHSGEVIYRGALESLYES.......... 227
8 -51.600[R] COG4619 ABC-type uncharacterized transport system, ATPase component  ali follow..  24  7LLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIY-RQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA............ 225
9 -51.100[H] COG3840 ABC-type thiamine transport system, ATPase component  ali follow..  27  1MLKLTDITWLYH--HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSR---RPVSMLFQENNLFSHLTVAQNIGLGLNPGLNAVQQEKMHAIARQM-GIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLSGKASASALLG. 229
10 -50.800[E] COG4161 ABC-type arginine transport system, ATPase component  ali follow..  29  2SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPS-LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEA...... 235
11 -49.900[R] COG4152 ABC-type uncharacterized transport system, ATPase component  ali follow..  24  1MLTIDHVTKTFGDYKAVDGLDLDIPEQQMFGLLGANGAGKTTTFRMILGLLSITEGSISWKGRPVNYH-----ISNKIGYLPEERGLYPKMKVRDQLVYLARLKEKREAVKELGTWLERF-NITDYENKKVEELAKGNQQKIQFISAVLHKPELLILDEPFSGLDPVNVELLKEAVISLKNSGVSILFSSHRMEHVEELCENLCILQKGKPVVQGKLKEIKRS.......... 219
12 -49.700[R] COG4136 ABC-type uncharacterized transport system, ATPase component  ali follow..  24  1MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALASCTGELWLNEQRIDILPTAQ---RQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEVRAAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKL.................. 216
13 -49.600[D] COG2884 Predicted ATPase involved in cell division  ali follow..  32  1MITLDHVSKKYLARPALDNVNVKIDKGEFVFLIGPSGSGKSTFMRLLLGAETPTSGDVRVSKFHVNKLPGRHILRQVIGCVFQDFRLLQQKTVYENVALEVIGRRSDAINQVVPDVLETV--LSGKANRLPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPDTSKDIMDLLERINRTGTTVLMATHDHHIVDSMRQRVVELSLGRLVRDEWCGIYGMDR......... 229
14 -49.200[E] COG4598 ABC-type histidine transport system, ATPase component  ali follow..  25  5KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD-LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLFGNPQSPRL.... 248
15 -49.100[P] COG3638 ABC-type phosphate/phosphonate transport system, ATPase component  ali follow..  25  24VLAVKGLVKAYSQHRVLDNINFELHAGEFVAIIGRSGAGKSTLLHILNGTIPTSAGEIINYHENGDTQNIAALWRAKCGMIFQDFCLVPRLDVITNVLLGRLSYTST--EQDQARAIELLQWMLPHALQRAENLSGGQMQRVAICRAMMQNPKILLADEPVASLDPKNTTRIMNTLQKISENDIAVIVNLHSVDLVKDYCTRVIGIAHGRIIFDGPPSMLNDSI......... 264
16 -48.700[R] COG1101 ABC-type uncharacterized transport system, ATPase component  ali follow..  26  1MIRLQDIQVTFNPNRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVGGQVLIDEIDVTKQSVDQRANCARVFQDPLAGTCGALTIEENMALASLALSNQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLVMATLSESKLLLLDEHTAALDPRMAAFIIDLTKKIKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG......... 240
17 -46.700[V] COG1131 ABC-type multidrug transport system, ATPase component  ali follow..  29  4ILSISGVSKTYAGFTALKEVNLDIQRGEIFALLGPNGAGKTTLISIVCGIVNRSTGTVTVDGHDIGKDYRA--ARSLIGLVPQELTIDAFESVWATVNYSRGLFGKPPNHGFVEKVLRDLS-LWDKKDAKAITLSGGMKRRLMIAKALSHEPRILFLDEPTAGVDVELRQDMWEMVRRLREDGVTIILTTHYIEEAEAMADRVGVINRGEIILVENKAELMHKLGRKRLVL.. 232
18 -46.700[P] COG4559 ABC-type hemin transport system, ATPase component  ali follow..  26  7SIRVTDLSYSVAGRELLSKLKFHLQSGEMLAVLGRNGAGKSTLLKHLTGELGK--SGVELFGQPLRDIKPAEAAKR-RAVLPQQTPLSFAYEVLDVVLLGRIPHGQRETVQDRAIAAACLERLSGYETRDVLTLSGGEQQRVHFARTLAQGERVLLLDEPTASLDLAHQHATLRLARELCREGVGVLAVLHDLNLAAQYADRVLMLAEGHVIACDHPAVALTPESIRTAY... 240
19 -46.600[P] COG1121 ABC-type Mn/Zn transport systems, ATPase component  ali follow..  22  5ILKVENLTVYQGNYLAIRDVSFNLLPGTDTAIVGPNGAGKSTLVKAILDLIPRRVGQIEIFGRPITKLGN---LRHLLGYMPQNFIF--PISVEELVGLGWVAEKSAAIATALKRT------TYHLRNQAIGTLSGGQLKRILLAYCLVIPRKILVLDEAFAGVDMQGAADFYAMLNELKQQGWTVLQVSHDIDMVSRHCDRVLCL-NQTVVCTGQPEIALSPQNLLATY... 246
20 -45.000[Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component  ali follow..  24  6AIEVKGLTKSFGSSRIWEDVTLDIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSILIDGTDIIECSAKELIRTLFGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLQLLGGDEKKFPGEISGGMRKRAGLARALVLDPQIILCDEPDSGLDPVRTAYLSQLIMDINAQDATILIVTHNVNIARTVPDNMGMLFRKHLVMFGPREVLLTSDE........ 235
21 -44.900[P] COG4604 ABC-type enterochelin transport system, ATPase component  ali follow..  22  1MIEINDVNKKYQQTTVLNEINERIPSGGITSIIGPNGAGKSTLLSIMSRLLAADSGNVLFNGLDVAKTSGDKLATI-LSVLRQENHFTSRLTVSDLVGFGRYPYSRGRLNKNDRQHID-FLNLMPLKDRYLDELSGGQRQRAYVAMVLCQDTSYILLDEPLNNLDMKHCVAMMKQLRRAADEHKTIILVIHDINFASAYSDHIIAMKNGEVIYRGAPAEIMQPSILEEIF... 233
22 -44.800[R] COG4586 ABC-type uncharacterized transport system, ATPase component  ali follow..  22  21.TLQHFWQRRYRQILAVQDISFTIPPGAMVGFLGANGAGKTTTLKMLTGLIKPSGGKVRVAGFDPFRRQTAFLRRTSLV-MGQKQQLIWDLPTLDSLRINGYEIPDQVFEQRLGELSEMLD-LTTELKQPVRKLSLGQRMKAELLAALLHHPTVLFLDEPTLGLDVNAQVAVRRFLQEYNRRQATVLLTSHYMADITTLCERVLLIHQGQLMYDGDLEALVER.......... 243
23 -44.500[P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component  ali follow..  28  3.IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD---RKVGFVFQHYALFRHMTVFDNIAFGLTVLNAAAIKAKVTKLLEMV-QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQVWREPATRLEFMG. 238
24 -44.400[E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components  ali follow..  31  4VVHFKNVNKYYGGLPAVDDLDLAVESGQFVTLLGPSGCGKSTTLRMLGGFEQPSSGEIYLEGKPITHLPPNR---RNVNIVFQDYALFPHLNVGRNIAFGLELKSSDAIHKRTMELLALV-KLQDFADRMPDQLSGGQRQRVALMRALAPDPNVLLLDEPLSALDAKLRQQMQIELKTIQRTGKTFIFVTHDQEEALTMSDVIVVMNKGRIEQMGGPNELYSRPRSRANFIG. 236
25 -44.200[H] COG4138 ABC-type cobalamin transport system, ATPase component  ali follow..  25  4VMQLQD----VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----LDDKLGRSTNQLSGGEWQRVRLAAVVLQAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAY... 230
26 -43.200[RK] KOG2355 Predicted ABC-type transport, ATPase component/CCR4 associated factor  ali follow..  16  13AIRVSGMQFAYEEDPIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHVGGKNVVQVLSRSATQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVE--GTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEE........... 238
27 -42.900[P] COG4107 ABC-type phosphonate transport system, ATPase component  ali follow..  23  5LLQVHELSKSYGGIKACDRISFDLYPGQVLGIVGESGSGKSTLLGAIADHIAVDHGNVTYISRSGEDLEIFQL-EWGFVQQNPRDGLRMRVSAGANIGERLLDIGVRHYGNIRDEAAHWLREVPTRIDDLPAQFSGGMQQRLQLARVLVTRPRLILMDEPTGGLDVSVQARLLDLLRSLVRNHLSVIIVTHDIGVVRLLAHRLLVMQQGQVVESGLTDQVLDDPQ........ 243
28 -42.800[P] COG1117 ABC-type phosphate transport system, ATPase component  ali follow..  30  24AMATEDLHVYYGDNHAIKGVDLTFPENKVTALIGPSGCGKSTYLRALNRMNDEMEGQILYDGININRKEVDLYVRKEIGMVFQKPNPFT-KSIYENVAFGL-MKNKKEIMERVEKSLRLWDEVKDDLGKSALSLSGGQQQRLCIARAVAMQPKVLLLDEPASALDPISTSKIEDLINELKNK-YTIIIVTHNMQQAARVSDYTSFFYLGEVVEFSGTSELFTNPQEKQTYISG 268
29 -42.400[PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components  ali follow..  24  5AISTETLSLGYGDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSVLLEGRAIAKLPTKEVAKE-LAILPQGPSAPEGLTVHQLVKQGRYKEDEEAVERALKAT-----KLEDMADRAVDSLSGGQRQRAWIAMTLAQETDIILLDEPTTYLDMTHQIEILDLLFELNEKDRTIVMVLHDLNLACRYAHHLVAIKDKRIYAEGRPEEVITCDLVQNVF... 239
30 -42.300[Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component  ali follow..  28  6SVEVHRLRKSVGELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGKPLHQMDEEARAAQHVGFVFQSFMLIPTLNALENVELPALLRGENSGQSKAGAKALL---LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREGTTLILVTHDPALA-ARCDRRLRLVNGQLQ..................... 225
31 -42.100[P] COG4778 ABC-type phosphonate transport system, ATPase component  ali follow..  25  1MINVQNVSKTF-RLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIEWVDLVTAPARKVVKTTVGWVSQFLRVIPRISALEVVMQPLLDTPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAKNSAAVVELIREAKTRGAAIVGIFHDEAVRNDVADRLHPMGASS....................... 226
32 -42.100[P] COG4148 ABC-type molybdate transport system, ATPase component  ali follow..  26  1MLEL-NFSQTLGNHCL--TINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMVDQFDKLVALL-----GIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTRENIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMN...... 223
33 -41.800[P] COG4525 ABC-type taurine transport system, ATPase component  ali follow..  26  1MLNVSGLWAEYQGKPALQDVSLQIASGQLVVVLGPSGCGKTTLLNLIAGFMTPSAGVITLDNIPVSGPSAER------GVVFQNEGLLPWRDVVSNVEFGLQLAGSKEQRRVTALKMLNRVGLAGFEHHFIWQLSGGMRQRVGIARALAVDPRLLLLDEPFGALDAFTREQMQELLLTIRDTGKQILLITHDIEEAVFLASELLLLSPG........................ 205
34 -40.500[V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component  ali follow..  24  4MLEVKHINKTYKGYQALKQISFSIEEGEFTAVMGPSGSGKTTLLNIISTIDRPDSGDILINGENPHRLKRTKLARKQLGFVFQDFNLLDTLTIGENIMLPLTLEAPSVMEEKLHGIAAKL--IENLLNKRTFEVSGGQRQRAAIARAVIHKPSLILADEPTGNLDSKATKDVMETLQSLNRDHVTALMVTHDPVSA-SYCRRVIFIKDVVLFNEENRQVFYEQILDVLSMLGG 247
35 -39.500[P] COG1135 ABC-type metal ion transport system, ATPase component  ali follow..  28  1MIEIKSVNKVFKQIHALKDINLFIPQGTIFGVIGSSGAGKSTLIRCVNMLEKPTSGQVIVDGVDLTTLSNPQLARRNIGMIFQHFNLLSSRTVFENVALPLELASQQHIETKVTELLALV--LSEKRESYPANLSGGQKQRVAIARALASDPKVLLCDEATSALDPATTQSILELLKEINRQNLTILLITHEMDVVKSICHEVAIIGGGELVEKGTVGDIFAHPK........ 233
36 -39.000[P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component  ali follow..  25  17AIELKDVQISFGRFDAVAESNLAVAENEFVAIVGPTGCGKSTLLNAVAGLLTPASGTVEISGQRLQGLNRKA------GYLFQQDALMPWKTVLENVAIGLEIAPKAKAREQAREWLNKV--LGTFGDRYPHMLSGGQRKRVGLAQVLIRNPKYLLMDEPFGPLDAQTRVIMGDLLLDLSQDKKAVMFVTHDLEEAIALADRVVIMSAG........................ 226
37 -38.600[E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components  ali follow..  29  1MIELDKLSKTFKEFRAVDSVSLTVEKGEICVFLGPSGCGKTTTLKMINRIIPPTSGRVLIDGQDTADLDEVTL-RRHIGYVIQQIGLFPNMTIEENIMVVPRLLDKARCKEKARELMSMVKL-KQYLQRYPRELSGGQQQRVGVIRALAADAPLLLMDEPFGAVDPINRESIQNEFFEMQRKGMTVIMVSHDIDEAIKLGDKVAVFKSGRLLQYDHPDTLLAHPA........ 233
38 -38.000[G] COG3839 ABC-type sugar transport systems, ATPase components  ali follow..  27  6.LKITDLYKSYGSVSVLKDINIEIDEGGFLVLVGPSGCGKSTLLNTIAGLEPITSGDIAINGKSVSNLHPSQ---RDIAMVFQSYALYPNMTVAGNIAFGMEIRPKPERDKAIQQVADML-QIGHLLDRKPSQLSGGQRRRVAMGRALVRNPQVFLFDEPLSNLDAKLRVDMRTEIKRLHSRKTTIVYVTHDQIEAMTLATKIAVLKDGVLQQFGTPAEIYNNPAFVADFMGS 238
39 -37.900[V] COG4167 ABC-type antimicrobial peptide transport system, ATPase component  ali follow..  20  5LLEVRNLSKTFQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFR-RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLASP......... 242
40 -37.700[R] COG3910 Predicted ATPase  ali follow..  18  12..KPEGREEYPFSVPAMRHLERLEFKTPITFFAGNNGSGKSTLLEGLAAGMTAYAIGNHGDVKGDLYLQHAETVAKAFYFA-RAEDVLGYIRRQNENALDDFRWEREKALKKGEDFPEETPERGIVRNNSLDRRSHGEG-FLDIMHRRLHGAGLYFLDEPESPLSPQKQLELAAIIRQAADSGGQLIIATHSPVLLAIPEATIYYFDEDGITERLYDE--LENIAFLRRFL.. 249
41 -37.500[EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component  ali follow..  26  5MLEIRNLSRCFGEVRAVDDVSFYIERGAVYGLAGESGSGKSTIARLIMGLEKPSCGEIRIDGEMIAAGAHSRAHGKKVQMVFQNSSLNPRRTVGQSVALDAHGFPSLQRAKRISELLEMVQLPANFAERFPHELSGGQKQRVAIARALAVAPKLLVLDEPTSALDVSVQAKVIDLLVDLGRRDLTYLFISHDLSLMRNFASRVGILYRGKLVETGKTDEVFYRP......... 243
42 -37.100[R] COG3845 ABC-type uncharacterized transport systems, ATPase components  ali follow..  25  5AIELIGINKSFGAVRANRDINLEIARGTIHGIVGENGAGKSTLMSILYGFYQADSGEIRVGGKPASIKTPNDAIALGIGMVHQHFMLVDNFSVLENIILGAESDSIAKARSELERLEREY--LEVDPDAIIEELPVGLQQRVEILKALYRGAEILILDEPTGVLTPAEADHLFRILKQLKEQGKTVVLITHKLREIMAITDNVSVMRQGTMVATRETSKT-TVGELAELMVG. 239
43 -37.000[P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA  ali follow..  20  7SLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLAQQF-GITPLLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQL.... 235
44 -36.600[E] COG4175 ABC-type proline/glycine betaine transport system, ATPase component  ali follow..  25  29.LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL-RKKIAMVFQSFALMPHMTVLDNTAFGMELAAAQERREKALDALRQV--LENYAHAYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPA........ 257
45 -36.100[G] COG1129 ABC-type sugar transport system, ATPase component  ali follow..  18  228VIEVEELQ----LKKGGPVSRFSLRKGEILGFAGLVGSGRTETVLAMLGAHSASRRKIKLDGVDTRLSGPDDALMRGIGLLPESRKLITSFSILQNISLNNYRKDLKKELEHTTKAMAQVQVKAQGPYARVDTLSGGNQQKIVIARWLNHDMRVLIFDEPTRGIDVGAKAEIYSLMREFAARGHSIIMISSELPEVIGMSDRVCVFRSGGIVATVEGEDINSETIMT...... 461
46 -35.500[GM] COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component  ali follow..  25  50.SKTNEGQEESKIVWPLRNLDFTGYKGEILGIIGSNGAGKTTLCKMLSGILKPDEGELYVDGR--------------SALFSLGMGFKKELTGRENAYLNGLGIEKDQIDQFIDEIHE-FSGLGSFIDQPMKYYSSGMKARLGFSVAAFLEPEILILDEALNTGDAAFGKKAAAKMKELVSKAKMVILVTHSLRYARKNCDRLLWLDRGEIRAIGEPAEVIEK.......... 259
47 -34.700[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component  ali follow..  22  4LLDVKDLRVEFGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNTGSAKFEGKEILNLPEREL-QIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGMGKAEAFEESVRMLPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMELLNELKRENTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFYNP--SHPYAEG 252
48 -34.400[R] COG4618 ABC-type protease/lipase transport system, ATPase and permease components  ali follow..  22  336.LRVENVTIVPERKPTVTGLGFVVTAGNALGIIGPSGSGKSTLARILTGAWMPAAGKVRLDGASFDQWDRETL-GRHIGYLPQGVELFDG-TIGENISRFDDNPDPEAIIAAAELILRFEKGYDSDIGEAGSTLSAGQRQRIGLARALYGDPFIVVLDEPNANLDAEGEAAVVKAITSVKARGGIAVVVAHRPS-AIGAVDYILMMEDGRMKAFGPRDEVLSK.......... 562
49 -34.200[E] COG4608 ABC-type oligopeptide transport system, ATPase component  ali follow..  24  5LLEVKNLTKSFGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAILRLIEPSSGEVYFAGTEITALSEGDM-DMQIIFQDPYASLNPRHTIEKIIREPLIVHQIGTKKEQLERVEELLETVSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDEPVSALDVSVQSQILNLMADLKETALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKDQLFENP......... 247
50 -34.200[R] COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog  ali follow..  25  335MVSFNSFSKQYGDGFSLKATGGSLREGEVLGIVGPNGIGKSTFVKVLAGEIKPDEGDPGIEVK--------------ISYKPQYIKADTPVSVQDFLRGITKRFGTSYYEVEIANPLQ----LERIYESLLTELSGGELQRVAIAACLSQEADLYILDEPSAHLDVEQRSMVTKVINRFAENQKTAMVVDHDIYMIDMLSQRLLVFE-GKPSVYGEAHGPFSMESGMNRFL.. 547
51 -34.200[V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain  ali follow..  24  477.VELKNITFGYSRLELIENFNLSIKPGQRVALVGGSGSGKSTIAKLVSGLYQPWTGEIYFDSQPREEISLQLL-TNSVAMVEQEILLFGG-TVRDNLTLWDTTVPDKNLMRACDVIFSMSGGYDAELIEGAANLSGGQRQRLEIARALVNNPSILVMDEATSALDAETEKII---DQNLRRRGCTCIIVAHRLS-TIRDCDQIIVLERGKVVQQGTHQELWQVE......... 701
52 -34.000[V] COG4170 ABC-type antimicrobial peptide transport system, ATPase component  ali follow..  22  3LLDIRNLTIEFGPVKAVDRISMTLTEGEVRGLVGESGSGKSLIAKAICGVSKDTADRFRFNDIDLLQLTPRQRRKV-IFQEP-GLQLIQAIPGWTYKGRWWQRFHWRKRRAIELLHRVGIKDHKDIMHSYPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLARLNQNNTTILLISHDLQMMSKWATRVNVLYCGQTVESAVCEDLLSTPH........ 251
53 -33.300[A] KOG0063 RNAse L inhibitor, ABC superfamily  ali follow..  19  77KDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNTPPDWEEILTHFRGSELRVVEENLKTAIKPQHVDYIKEVVRGNLGKMLEKLDERGLMEEICADLNQVLEREARQVSGGELQRFAIAAVFVKKADIYMFDEPSSYLDVRQRLKAAQVIRSLLRHDSYVIVVEHDLSVLDYLSDFVCCLY-GKPGAYGVVTLPFSVREGINVFLAG 315
54 -32.800[QP] COG4615 ABC-type siderophore export system, fused ATPase and permease components  ali follow..  21  323.LELRNVTFAYDNAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDY-RKLFSAVFTDVWLFDQ-LLGPEGKPA----NPQLVEKWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPMQEMGKTIFAISHDDH-YFIHADRLLEMRNGQLSELTGEERDAASRD........ 541
55 -32.800[CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components  ali follow..  30  339.LTLRDVQFTYPE-QALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAAL-RQTISVVPQRVHLFSA-TLRDNLLLASPGSSDEALSEILRRVLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHR---RGLSRFQQIIVMDNGQIIEQGTHAELLARQ......... 563
56 -32.700[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase  ali follow..  20  314ILEVKDLSMHFGEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRADGSVVDLSKIEGKELKAARRELRMVPRMTVAQVIGEPLLVNGIAKGKELEERVCSLMEQVPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQVLDLLMKLQDEGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPD........ 551
57 -32.000[CO] COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components  ali follow..  21  350.IIANDLVVLSPQ-RLAGPLSFTLQSGKTTALVGPSGAGKTSLINTILGFM-PYQGSLTINGIELRELDHAQW-RQTISWVGQNPLLLYG-TIRDNVTLGKHNIADEQVTQTLQAAFVEQQGLDYPISDRSAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQ---QPLQSVEQILVMENGLLVQAGHFEDLSQQS......... 572
58 -30.500[O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component  ali follow..  21  1MLEIRNLHARIVD-EIIRGLNLTVKAGEVAAIMGPNGSGKSTLSYILAG-YEVTEGDILYNGQSILEMDPAERATSGIFLAFQYPMEIPGVATMEFLKVAMNEQRKARGEEPLK-IPEFLKRVKEAAASLN--FSGGEKKRAEILQMKLLEPKLCVLDETDSGLDIDALKIVSDGVNALRAPDRAFLVITHYQRLLEHIVDSVHVLYRGQVIKSGDKS............... 233
59 -29.800[R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component  ali follow..  24  7ILSVKDLRVRFGAVEAVKGINIHVNAGETVAVVGESGSGKSQTMMAAMSLLASNTGSVDYRGRNLLTLSKSDL-KISMIFQEPMTSLDPLYSIGNQLIEPIRRHRGLNAAEAREEALKLLRLVERRMKSYPHEMSGGQRQRVMIAMALANDPDILIADEPTTALDVTIQAQILMLLAELQRKGMAIVFITHDLGIVRRFADRVYVMRQGEVVEEGEAGAIFANPQ........ 249
60 -29.000[O] COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components  ali follow..  27  363.ISFKDVHFAYDP-PILRGISFDVPAGKTVAIVGPSGAGKSTISRLLFRFYDIQSGSITIDGQDVRDVTQESL-RKFIGMVPQDTVLFND-TIAYNIRYGRTDASEEDVEKAAGFIKHLPDGYKSMVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTATEQEIQSALDIVSRGRTTLVIAHR---STVIGADEIIVLKDGLIAERGTHRHLLDQKGL....... 590
61 -28.600[R] COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain  ali follow..  22  412VLESFGVRQRVVERYVLRDVNLEIKPGEIVAVVGASGSGKTTFLRLIVGEALKLDDDVYKPSSGMVEVVVDSIAAM------IPSELEPQITEKSILEQIFDITGDIHLAVEVLNRAGISDAVLYR--ARFNELSTGQKERFKLAACLAKKPSLMLVDEFAAHLDEMTAVRVARKISELAREKITLIAVTHRKEVINALSDRILYVGYGGVTES................... 619
62 -28.500[EJ] KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b  ali follow..  23  6EIVNTDFSLAYGSRMLLNKTNLRLLKGHRYGLCGRNGAGKSTLMRAIANGQLDGFPRTCFVEHKLQGEEGDLDLVSFIALDEEL---------------------QSTSREEIAAALESVGFDEERRAQTVGSLSGGWKMKLELARAMLQKADILLLDEPTNHLDVSNVKWLEEYLLEH--TDITSLIVSHDSGFLDTVCTDIIHYENKKLAYKGNLAAFVEQKPEAKSY... 218
63 -28.200[Q] KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein)  ali follow..  27  108..............TLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGKGTVKLNGETLQS----RMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRPKSKKKLRVQALIDQL--IRNAAKTIIGDISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVIMIHQPSHRVLGLLDRLIFLSRGHTVYSGSPASLPR........... 323
64 -28.100[V] COG1132 ABC-type multidrug transport system, ATPase and permease components  ali follow..  26  342.IEFRHVTFYYPG-PALNDINIHLEAGKTVALVGRSGSGKSTIANLLTRFYDVSEGSILLDGHDLRDYRLGAL-RNQVALVSQNVHLFND-TVANNIAYAQYSRAEIEEAARMAYAMDFINKMEHGLDENGIMLSGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR---STIEKADEIVVIEDGRIVERGVHAELLVQQGV....... 571
65 -28.000[U] KOG0057 Mitochondrial Fe/S cluster exporter, ABC superfamily  ali follow..  25  439.ISFENVHFSYLP-KILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDVDSGNVKIDGQDIKEVRLESL-RSSIGVVPQDTVLFND-TIFHNIHYGNLSATEEEVRAAIHDTIMKFPDYSTAVGERGLMLSGGEKQRVALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLASNRTCIFIAHR---TTAMQCDEILVMEKGKVVEKGTHEVLLGKSGR....... 666
66 -27.200[U] KOG0058 Peptide exporter, ABC superfamily  ali follow..  22  504.VDFENVTFTYRTTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGRVLLDGKPISAYDHKYL-HRVISLVSQEPVLFAR-SITDNISYGLPTVPFEMVVEAAQNAHGFIMELQDGYSTETGQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQKHTVLIIAHRLS--TVEHAHLIVVLDKGRVVQQGTHQQLLAQGGL....... 733
67 -26.700[IR] KOG0060 Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis)  ali follow..  17  442.IRFDNVPLVTPNGDVLERLNFEVPSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPAKGKLFYVPQRPMTLGTLR----DQIIYPDRPLDMIRKGVSDSDLEQMLENVQLTHILERE--SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGAMYRLCRE---KNITLFTVSHRKSL-WKYHEYSLYMDGRGSYRFEQIDDQSDQ.......... 658
68 -26.300[J] KOG0066 eIF2-interacting protein ABC50 (ABC superfamily)  ali follow..  22  673ILGVHNVTFAFSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEPQEGEQRKNHR----------LHVGRFDQHSGEHLTAEESAAEYLQ-----RLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCLSAPDVLILDEPTNNL----IESIDALAEAINEYEGGVIIVSHDERLIRETGCTLYVIEDQTI...................... 866
69 -26.200[P] KOG0056 Heavy metal exporter HMT1, ABC superfamily  ali follow..  24  576.IEFSNVTFGYSP-IVLRNVSFTVPAGKTVAIVGPSGAGKSTIMRLLFRFYDVQTGAILIDGQNIKLVQQQSL-RKAIGVVPQDTVLFNN-TIFYNIEYAKLGASDEAVAADIHERILGFPEYETKVGERGLRLSGGEKQRVAIARTLLKAPIIVLLDEATSALDTHTERNIQAALARVCANRTTIIVAHR---STIIHADEILVLQQGSIAERGRHEELVLREDGIYADM.. 808
70 -26.000[I] KOG0064 Peroxisomal long-chain acyl-CoA transporter, ABC superfamily  ali follow..  16  505.ISLRAVPVVTNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRPV---------DVPCMFYIPQ-RPYMSIGSLCDQIIYPDTREDMKRKHITENELRSILKMVSDVVRDWKDILSGGEKQRMAIARLFYHRPRYALLDECTSAVSIDVESSIYEIAKGM---GITLLTITHRPTL-WKYHTHILEFDNWQFRKMNSDEEQKGQ.......... 727
71 -25.900[R] COG4178 ABC-type uncharacterized transport system, permease and ATPase components  ali follow..  18  426.VHVVAVEVRTAGEQLIDPLDLQLNCGSSLVITGRSGVGKTTMLRSLAELWPYASGTLSRPD-----------GKNETMFLSQ-LPYVPLGNLRGVVCYPNAPADEDTVRDTLTKVLNPLCDRLDEERDWAKILSPGEQQRIAFARILLTKPKAIFLDESTSALDEGLEFALYQMLRSE-LPDCIIVSVSHRRAVELLHAQQLELLGGGQWRLGPVEKEPLH........... 637
72 -24.500[R] KOG0927 Predicted transporter (ABC superfamily)  ali follow..  20  385VIMVQNVNFRYND-WIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSH----------LRIARYHQHLHELLDLDASPLEYMM----AFPDVKEKEEMRKIIGRYGLTGRQQVCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHL----METIDALADAINDFDGGMVLVSHDFRLINQVAEEIWVCEKETV...................... 581
73 -24.300[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains  ali follow..  25  324VIEVQNLTKSYGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLSGQEQPDSGSVTMGE------------TVVLASVDQFRDSMDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPG---CAMVISHDRWFLDRIATHILDYG.......................... 516
74 -24.300[P] COG1122 ABC-type cobalt transport system, ATPase component  ali follow..  18  7LIELRVDKYTYNGRVGLSDFYATFEGCDF--IIGPTGSGKSTVLKMVNGLIPNFLGGTLEGKVRVFGEKPNPRIAFFVKQNPEEM--ITSTQVIDELVFPLIQQGWGEAKREAEEVCEELG-IGGLLERKTYELSTGELQLVQIAAALASKARILVFDEPFANLSRKNVLKVIKILR-----DYPHLVSEHRLEFSSFFEKTINLGLECED...................... 210
75 -16.800[R] COG3044 Predicted ATPase of the ABC class  ali follow..  17  209FIAPKSLEVTLSTPNQGELVGMGIPQG-ITLIVGGGFHGKSTLLTALE---RSVYNHIPGDGRERMVTDVKAM-----IRAEEGRCV----------------------NLNLSNYINHLPMGKDTTDFSTQDASGSTSQSAWLQESIEAGVTTLLIDEDTSATNFMIITPLVDRIGQLRDDGISTLVVMGGSGDYLDVADTVIQMHDYQPVVTEKAREVIAQHPTLRR.... 425

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.