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Query: [H] COG0117 Pyrimidine deaminase, from COG0516

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEKAKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEVEVGICKQEALDLNRIFFHFVRLast
1 -95.500[H] COG0117 Pyrimidine deaminase  ali  100  1MTDEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEKAKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEVEVGICKQEALDLNRIFFHFVR 143
2 -41.300[FJ] COG0590 Cytosine/adenosine deaminases  ali follow..  34  27.QDEQFMRRAIVLAAQAEAQGE----VGAVLVRDGEIIAEGWNGSITNAHAEIEVIRKAGKRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAATVEKGLLEEECRAQLQAFFQRRR 173
3 -31.000[F] KOG1018 Cytosine deaminase FCY1 and related enzymes  ali follow..  23  138.KLIDLGYTMSKPAKLAL--EALEVPVGCVFLEDGKVIASGRNRRNATRHAEMEAIDQLAEKFSKCVLYVTCEPC------IMCASALSFLGIKEVYYGCPNDKFGGCGSILSLHLGKGYKCRGGIMAEEAVSLFKCFYEQGN 296
4 -28.600[F] COG2131 Deoxycytidylate deaminase  ali follow..  29  7..DQYFMAQSHLLALRS---TCTRLMVGATIVRDKRIIAGGYN---GSIHAEVNALLQCGVPTEGAEIYVTHFPCVN------CTKAIIQSGIKKVYYATDYKNSPYA---EELFRDAGVDVE.................... 137
5 -21.000[F] KOG3127 Deoxycytidylate deaminase  ali follow..  20  319..ARHCMVQARLLAYR---TEDHKTGVGAVIWAEGKFVGCGYN---AFPHAEQNALTFRCQEEERSMIFVTKCPCDE------CVPLIKGAGIKQIYAGDVDVGKKKADISYMRFGEEGVSKFTWQLNPSGAYGLE....... 482
6 -15.500[A] KOG2771 Subunit of tRNA-specific adenosine-34 deaminase  ali follow..  14  253..........................LMNNEDYKDLTFGAEKSRECKEVDAVQGA-KFGPYLCTGYDIYLLQEPCL-------CSMALVHSRAKRVFFVK-NSENGALATRFQLHSVRELEVFQFTTKEDEDL.......... 359
7 -6.630[H] COG0854 Pyridoxal phosphate biosynthesis protein  ali follow..  22  10..........IATVRNARGTTYPSPVEAALVAETHGADLITMHLREDRRHADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEI---TTEGGLDVLAQ-TKILTDAGIRVSLFIDADDRQ........... 137
8 -6.520[J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11  ali follow..  20  85..................GKATPAPPVGPALGSKGVNIMA------------CKDYNARTADKAGYIIPVEIKSFTFILKTPPASVLLLKA--AGVEKGSKDPQQTIAAEKLPDLNCTTIESAMRIIAGTAANMG........ 205
9 -6.350[O] KOG0883 Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase  ali follow..  16  308..........IRLCKKHYYDGT-HRSIRNFVIQGGDPTGTG---TGGESHTGRGILSMAGPNSNRSQFFITFRSCAYFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQERKTQLKV....... 455
10 -6.310[R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase  ali follow..  14  452LKSEEVFRQFFGIYVQAHYRNEPDDLARALALPNGKIVVSVELAYEGGLDDLSIDQALRGLKLPGNIIPDRF--LKYWR-----LPEFAKLRGWRIVRIATHPELQDMGLGTLMLK----KIEEEARELGMDYVGVGF..... 588

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 0 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.