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Query: ACL93470.1, from C.crescentus

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNAITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLEMLLRQAIPTFETIYGQAPSPKIDVRVLALKLLGEVLast
1 -70.300d3dona2 c.2.1.7 (A:100-269) Shikimate 5-dehydrogenase AroE {Staphylococcus epidermidis [TaxId: 176279]}  ali model 3D-neighbors follow..  29  1.............................................................................................................DGIGYVNGLKQIYEGI--EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN----KINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQKLKGEL 170
2 -66.100d2egga2 c.2.1.7 (A:123-297) Shikimate 5-dehydrogenase AroE {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  30  1.............................................................................................................DGLGYVQALEEEM-NITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEQPLSLERLRPGVIVSDIIYNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEAL.... 173
3 -61.300d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  1.............................................................................................................DYIAIVKLIEKYHLN---KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN------SLENQQADILVNVTSIGMKGGKELAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAAFAR.... 166
4 -60.500d2hk9a2 c.2.1.7 (A:106-269) Shikimate 5-dehydrogenase AroE {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  30  1.............................................................................................................DWIGFLKSLKSLIPEV--KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLAQKFP----LEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKE--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDLR.... 163
5 -55.500d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  1.............................................................................................................DGVGLLSDLERL--SFIRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI-PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL.... 169
6 -54.700d3tnla2 c.2.1.0 (A:113-291) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  28  1.............................................................................................................DGTGYMRALKEA--GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKYANAEKTVEKINSKTDCKDHEQLRKEIAESVIFTNATGVGMKPFEGLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF....... 179
7 -54.500d3phha2 c.2.1.0 (A:105-263) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  23  1.............................................................................................................DALGFYLSLKQ------KNYQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCDCFM-------EPPKSAFDLIINATSASLHNELPKEVLKGYFKEGKLAYDLAYGF-LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF.... 159
8 -52.400d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  35  1........METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNT................................................................................................................................................................................ 101
9 -51.300d3tnla1 c.58.1.0 (A:4-112) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  36  2ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV-NDDGVLTGHIT................................................................................................................................................................................ 109
10 -51.100d5dzsa2 c.2.1.0 (A:101-269) automated matches {Peptoclostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  27  1.............................................................................................................DYFGLDSMFKMA--NIDVQGKVAVILGTGGASKAALTYFIDSGIEKLYVSTRKKDDKKLLNSKAI------LIDYEELKHIKGDIILNATPVGMYPNVGSPVSKSIIQNFDILIDLIYNPGETEFLRIGNSMGKKTCDGLYMLVGQAIKSQEIWQDTKIDNS-ILDVIYNELKLEF 168
11 -49.800d5dzsa1 c.58.1.0 (A:1-100) automated matches {Peptoclostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  27  2.........NFFGLVGEKLSHSVSPQIHKRVFEILNIESAYKNFEISKEDISKLDGAIKLLGIQGVNVTVPYKERIMKYLDFISPEAKRIGAVNTIL-LRENMLYGYNT................................................................................................................................................................................ 100
12 -39.100d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  1...MINKDTQLMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTT--QDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIESVNTIV-NDNGFLRAYNT................................................................................................................................................................................ 102
13 -19.500d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  19  1.........................................................................................................SEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG--EAVRFDELVDHLARSDVVVSATAAPHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLER.......................... 156
14 -13.800d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  19  1...............................................................................................................................ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSLDVNDDAALDAEVAKHDLVISLIPYTFH----ATVIKSAIRQKKHVVTTSYSPAMMELDQAAKDAGITVMNEIGX.................................. 124
15 -12.700d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}  ali model 3D-neighbors follow..  21  1.........................................................................................................GSNTTAAAGVALV-VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRAETADDASRAEAVKGAHFVFTAGAIGL.................................................................................. 104
16 -10.900d1xc2a3 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  15  2..................................................................................................................................NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSAT-----LPELHSDDVLI----LAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGT-VRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKS..... 144
17 -10.200d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  23  6.....................................................................................................................................VMGCADIARKVSRAIHLAPNATISVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEI-----------------------------DALYVPLPTSLHVEWAIKAAEK--GKHILLEKPV............................ 99
18 -10.100d3tria1 c.2.1.0 (A:2-162) automated matches {Coxiella burnetii [TaxId: 777]}  ali model 3D-neighbors follow..  13  1...............................................................................................................................NTSNITFIGGGNMARNIVVGLIANGPNRICVTNRSLDKLDFFKEKCGVHTT----QDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKA-VRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRA..... 153
19 -9.790d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  10  5.............................................................................................................................PADSYTLGFIGAGKMAESIAKGAVRSGPSRIKTAIHSNPARRTAFESIGITVL----SSNDDVVRDSNVVVFSVKPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWAGHERFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSI.... 159

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 7 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.