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Query: ACL93470.1, from C.crescentus

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNAITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLEMLLRQAIPTFETIYGQAPSPKIDVRVLALKLLGEVLast
1 -61.200d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  1.............................................................................................................DGVGLLSDLER--LSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI-PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL.... 169
2 -59.400d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  1.............................................................................................................DYIAIVKLIEKYHLN---KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN------SLENQQADILVNVTSIGMKGGKDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAAFA..... 165
3 -58.200d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  36  2.........ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNT................................................................................................................................................................................ 101
4 -57.800d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  31  1.............................................................................................................DGIGARMALEEE--IGRVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNEVKFSGLDVDLDGVDIIINATPIGMYPNIDPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI.... 175
5 -49.200d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  1......AKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIV-NDDGYLRGYNT................................................................................................................................................................................ 102
6 -48.400d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  30  1.............................................................................................................DGTGHIRAIKES--GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRFDKALAFAQRVNENTDLADQQAFAEALASADILTNGTKVGMKPLENESLDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM........ 178
7 -39.200d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  1...MINKDTQLMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTT--QDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIESVNTIV-NDNGFLRAYNT................................................................................................................................................................................ 102
8 -18.900d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  19  1.........................................................................................................SEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG--GEAVRFDELVDHLARSDVVVSATAAPHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLER.......................... 156
9 -14.500d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  19  3.................................................................................................................................KSVLMLGSGFVTRPTLDVLTDSG--KVTVACRTLESAKKLSAGVQHSLDVNDDAALDAEVAKHDLVISLIPYTFH----ATVIKSAIRQKKHVVTTSYSPAMMELDQAAKDAGITVMNEIGX.................................. 124
10 -13.700d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}  ali model 3D-neighbors follow..  21  1.........................................................................................................GSNTTAAAGVALV-VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRAETADDASRAEAVKGAHFVFTAGAIGL.................................................................................. 104
11 -10.800d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  15  2..................................................................................................................................NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSAT-----LPELHSDDVLI----LAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGT-VRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSV.... 145
12 -9.240d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  23  6.....................................................................................................................................VMGCADIARKVSRAIHLAPNATISVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEI-----------------------------DALYVPLPTSLHVEWAIKAAEK--GKHILLEKPV............................ 99
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;