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Query: ACL93483.1, from C.crescentus

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIVTLTDQPFEPGVLVSAFCAGREETGAVATFIGLARAEQGAARALELEAYPGFTDAAITEIAQGAVTRFALQDVHIVHRVGVIAPGEAIVFVATAAAHRREAFEACDYLMDYLKSRAPFWKKEHGPEGPRWIEPTARDRTDAQRWDQEALast
1 -40.100PF02391.15; K3WEI0_PYTUL/34-147; MoaE protein  ali follow..  28  1....IGYEPLDGQRAVDLVT--HASAGAISTFIGTTRDQGKRVVRLEYEGYVPMAIAELRKICAQIRAQWPVVGIALFHRLGVVEVKEASVIITVSSPHRTEALEACAFAIDTLKAT................................. 114
2 -10.100PF16301.3; D6D572_9BACE/21-168; Domain of unknown function (DUF4943 topsan)  ali follow..  13  6..........DVALFVKQLKSGTYKMKNDKGVVEVPHFTEEDIPELIIPSFPSVYNMNNGKIRLGECMLWVIESI----RQGTPPSLGCKMVLANAENYEAIYFLTDEEVLDAAACYRSWWEERQYPKTRWTIDPCYDEPGSGYRW.... 147
3 -6.850PF03843.11; Q9KQL1_VIBCH/34-187; Outer membrane lipoprotein Slp family  ali follow..  18  24................SAWLERDPATQSPVRMGGVV-SNQKDRTRVELVNLP-IDSAGRPNIHQEPQGRF------VAYVPGFLDPGRLLTLYGTTAPSEQGKVGDYEHTYPVMNAQG-LWRVEE......................... 133
4 -6.470PF10056.7; R7YGU3_CONA1/173-256; Uncharacterized conserved protein (DUF2293 topsan)  ali follow..  13  4................................................DLFPKIPDTAVDVIVEHAFRE----GTKRIGTVAELSLARRVQLAVLAHRHQYTDYDARTAVAPVCLKQLLEWR............................ 84
5 -6.350PF15160.4; W5PK35_SHEEP/43-278; Spermatogenesis-associated serine-rich protein 1  ali follow..  13  108........................HVGKQCFFNGVFLGNRRSLSERIVDKSLGRKKCVLDPKLTPGDNPYMYPEQS-FHKAGSTLPP--VNFSLVPYEKKFDTFIPLE-----QIPNLPFWVKEKANM----LKSEIREVEELDDWQPA. 230
6 -6.280PF07510.9; A6VMJ2_ACTSZ/423-561; Protein of unknown function (DUF1524 topsan)  ali follow..  14  49...........................................DAFNIEHLPQNAPDGWGGFSYEEMSAL-------TYRLGNMTLLQASANRDLGTAQKRAVLEQSNFVLTKLSEQYAEWTPATIASWQRWLANQ.............. 139
7 -6.150PF06889.9; G8UPT4_TANFA/116-295; Protein of unknown function (DUF1266 topsan)  ali follow..  12  80......................................................TITDMEDLARIGVAGWDVARLSFITRAEYIDEETAWGYLQAADQLAHATLGS-ALGDSYVVGRY-FWGGVDEASSLIHLYAKELSEKPQSPWKR.. 177
8 -5.900PF16825.3; Q586T1_TRYB2/64-236; IGP family C-type lectin domain  ali follow..  13  18..VLPADQTEAAHQSLQDAMKSVIFEFEAVSYLG-----DAVYSSTRVFEADKRCKPGDAASSRHCVYRW---------NKGL--------FAKALPDGHGVAFWRGSY-AAPMNGYPSFWGSEYPKSGQLYTLSWYHEHEDVTTW.... 144
9 -5.830PF12658.5; B8LUN8_TALSN/1-139; Telomere capping, CST complex subunit  ali follow..  15  16.....................SSLPPHTKVRFLGCVTRYDTVRGRLELEHFPPLSRKDKKRSSSIASRRVSVDICHVLNTIGQLQVGTWLNIFGYIRL.................................................... 95
10 -5.820PF01220.17; G8UL23_TANFA/3-138; Dehydroquinase class II  ali follow..  13  7............GPNLNLLGKREPGIYGDVSFEDYLRQLRAACPQCEITYFQSNSEGELLDKIHETGFVCDLNAGAYAHTSIALHDA-PVVEVHLSNIYARETFRHHSLL........................................ 112

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.