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Query: ACL93487.1, from C.crescentus

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MKAGPDAEADALGDEEDIAMFVQALAGVNMDYRRVLSLLIPRLAALEERGDTAGAVRLIQEIQAIINAPERPEHLast
1 -6.4103p14_A mol:protein length:424 L-rhamnose isomerase  ali model follow..  15  329............ASINRIAAWTIGTRNVIKALLFAMLIPHKQLKEWQETGDYTRRLAVLEEFKTY......... 381
2 -6.3902lzn_A mol:protein length:143 DNA primase  ali model follow..  16  77LISLEQYNLNDEPYENEIDDY---VNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK......... 138
3 -6.2102hcv_A mol:protein length:438 L-rhamnose isomerase  ali model follow..  13  333..............TDPIESLINSANEIRRAYAQALLVDRAALSGYQEDNDALMATETLKRAYRT......... 383
4 -6.2001d8w_A mol:protein length:426 L-RHAMNOSE ISOMERASE  ali model follow..  22  331............ASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSL......... 383
5 -5.7505I4L Entity 72(prereleased)  ali follow..  27  39.................VRSLVREIAGLSPYERRLIDLI-ARKVAKKRLGSFTRAKAKVEEMNNIIAASRR... 98
6 -5.7003hdx_A mol:protein length:478 SusD superfamily protein  ali model follow..  22  362.................................RLEDITLLRAEALCALNRSTEAVSYLNMIRT.......... 392
7 -5.6201z8s_A mol:protein length:146 DNA primase  ali model follow..  12  77ASELSLLLIADDVSEQELEDYIRHVLNRPKWLM--LKVKEQEKTEAERRKDFLTAARIAKEMIEM......... 139
8 -5.6004v7f_g mol:protein length:100 60S ribosomal protein L36  ali model follow..  27  40.................VRSLVREIAGLSPYERRLIDLI-ARKVAKKRLGSFTRAKAKVEEMNNIIAASRR... 99
9 -5.5304fq9_A mol:protein length:172 3-hydroxydecanoyl-[acyl-carrier-protein] dehy  ali model follow..  18  9.............TREDLLRCSRG-ELFGPGNAQL-MLMIDRIVHISDVGGKYGKGELVAE............. 58
10 -5.5102hjs_A mol:protein length:340 USG-1 protein homolog  ali model follow..  17  156LTACLSVSSLGREGVKELARQTAELLNARPLERQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERI.... 230

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.