current user: public




Query: gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153), from C.acetobutylicum

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400
# Score Template Links and tools%idFirst ISYTNQVDYISEEKALKLYGGSLKMSVSRLEKYIECPFSYYVQYGLNIKDRKIFSLTPPDLGSFMHKVIDRFCETIKEENIDWNEVNDHICEEKIYKIVDQEIEGRGGSILNSSPRYSYIALRLKRILKRTVRIVAEQFKRGSFKPVGYEVSFENGGSYPPITVGLNDGSEVVLTGRIDRIDMMEKDGSTYIRIVDYKSGNKIFKLSDVYYGFDIQLLLYLNAILENENLDEEDKVLPGAILYFTMDDPIIKGKNNLTDEQIREEIMKSLKMKGLLLSDPDVIKEMDREMEGSSIIIPASIKKDGTLGRSSAATKEQFDILIEHVRNLVVKNCENLLMGDIRIKPYKKGKEKPCDYCMYSSICRFDTMFDGNNYRYVKEKSDEEVWKLIEREMSEEGDERGEDLast
1 -10.200d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  49........................................................RGASPGTFLHSLFEDL----------------DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSLKGFIDLV--FRHEGRYY--LLDYKSNQQAMAAAMQAHRYDLQYQLYTLALLRHRIADYDYEHHFGGVIYLFLRG-----------------VDKEHPQQGIYTTNAGLIALMDEMFAG............................................................................................................... 276
2 -5.070d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}  ali model 3D-neighbors follow..  10  1................................................................................................................................................................................................................................................................................RGVVIDKEVVHPRMPKRVENAKIALALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED....... 127
3 -4.490d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  27.................................................................................................................................................................................................LLFYRMG----DFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPV--ERKVVRIV..................................................................................................................... 113
4 -4.430d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}  ali model 3D-neighbors follow..  10  5...............................................................................................................................................................................................................................................................................LRGVMINKDVTHPRMRRYIKNPRIVLSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDD....... 132
5 -4.340d1gqva_ d.5.1.1 (A:) Eosinophil-derived neurotoxin (EDN) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  4........................PQFTWAQWFETQHINMTSQQTNAMQVINNYQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNISNCRYAQTPANMFYIVACD--RRDPPQYPVVPVHLDRII.......................................................................................................................................................................................................................................................... 135
6 -4.270d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}  ali model 3D-neighbors follow..  11  1........................................................................................................................................................................................................................................................PIFTLNTNIKATDVPSDFLSSTS------------ALVGNILSKPGSYVAVHINTDGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRM-------YIHFVNLNGDDVGWNGTTF............................. 113
7 -4.230d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  1...............................................................................................................................................FETISSETLHGAIFALRRDQVRMPGGGIVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWEL-------------------------------PAGLLDVAGEPPHLTAARELREE------------VGLQASTWQVLVDLDTAPGFSDESVRVYLATG--LREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEI.............................................................. 159
8 -4.200d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  13  3..................................................................................................................................................INIEIAYAFPERYYLKSFQVDEGITVQILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPL.............................................................................................................................................................................................. 76
9 -4.180d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  1........................................................................................................................................................................................................................................................PMFIVNTNVPRASVPEGFLSELT------------QQLAQATGKPAQYIAVHVVPDGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRV-------YINYYDMNAANVGWNGSTF............................. 113
10 -4.140d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  8..............................................................................................VPGVLGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGLSVIAEVKRQEVDPVEAALAYARGGARAVSVLT----EPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA---FGASAALLIVALLGELTGAYLEEARRLGL------EALVEVH---TERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVL--IGTSLMRAP............................................................... 243

FFAS is supported by the NIH grant R01-GM087218-01
6 6 6 4 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.