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Query: gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range:751-1153), from C.acetobutylicum

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ISYTNQVDYISEEKALKLYGGSLKMSVSRLEKYIECPFSYYVQYGLNIKDRKIFSLTPPDLGSFMHKVIDRFCETIKEENIDWNEVNDHICEEKIYKIVDQEIEGRGGSILNSSPRYSYIALRLKRILKRTVRIVAEQFKRGSFKPVGYEVSFENGGSYPPITVGLNDGSEVVLTGRIDRIDMMEKDGSTYIRIVDYKSGNKIFKLSDVYYGFDIQLLLYLNAILENENLDEEDKVLPGAILYFTMDDPIIKGKNNLTDEQIREEIMKSLKMKGLLLSDPDVIKEMDREMEGSSIIIPASIKKDGTLGRSSAATKEQFDILIEHVRNLVVKNCENLLMGDIRIKPYKKGKEKPCDYCMYSSICRFDTMFDGNNYRYVKEKSDEEVWKLIEREMSEEGDERGEDLast
1 -15.100d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1..............................DNWRVTSYSGLQQRGHGIAQDLMPRLDGASPGTFLHSLFEDL----------------DFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRMQVRGMLKGFIDLV--FRHEGRYY--LLDYKSNQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADEHHFGGVIYLFLRG-----------------VDKEHPQQGIYTTNAGLIALMDEMFAG............................................................................................................... 276
2 -6.390d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2................................................................................................................................................................................................................................................................................................................................................................PCKLCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKK.. 56
3 -6.180d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain (RecC), C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  11....................LPETVPLETLQRFWAHPVRAFFQMRLQVNDTEPFILEGLSRYQINQQLLNALVEQ--------------------DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACN------------------GVQITGWLPQV-----------GLLRWRPSLLSVA----------GMQLWLEHLV.................................................................................................................................................................................. 169
4 -5.520d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI, C-terminal (catalytic) domain {Flavobacterium okeanokoites [TaxId: 244]}  ali model 3D-neighbors follow..  10  1..........................................................................................................KSELEEKKSELRHKLKYVPHEYIELIEIARNSTQDRILEMKVMEF----------------RGKHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSGGYNLPI---GQADEMQRYVEENQTRNKKVYPSSVTEFKFLF-------VSGHFKGNYKAQLTRLNHITNCNGAVLSVEELLIGGEMIKAGT.............................................................................................................. 176
5 -5.250d2ccya_ a.24.3.2 (A:) Cytochrome c` {Rhodospirillum molischianum [TaxId: 1083]}  ali model 3D-neighbors follow..  12  29...............................................................................................................................................................................................................................................................................AAGKADLPADAAQRAENMAMVAKLAPIGWAKGTEALPNGETKPEAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCKACEFKQ.......................................... 126
6 -4.850d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}  ali model 3D-neighbors follow..  14  1...............................................................................................................................................................................................................................................................................................................................................TGAGTPSQGKKNTTTHTKCRRCGEKSYCGFGKSAKRRDYEWQSKAGE..................... 56
7 -4.580d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1.......................................................................................................................................................................................................................................................................................................................LEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIE-GKCYKCTECIEYHLCQ--DSYCHLSHTFTFREKRNQKWRSLEKRADE........ 84
8 -4.400d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}  ali model 3D-neighbors follow..  10  1....................................................................................QKRDNVLFQAATDEQPAVIKTLEKLVNIETGTGD------AEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDTV---VEGDKAY-GIADDKGG----------------NAVILHTLKL................................................................................................................................................................................. 130
9 -4.370d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  17  3..........ERGWSQKKIARELKTTVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCRRGDTLDEIIKRLLEESNKEGIHVIHDSIT.......................................................................................................................................................................................................................................................................................................................... 84
10 -4.300d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}  ali model 3D-neighbors follow..  15  38.............................................................................................................................................................................IAGTVVDIE-HDPARSAPVAAVEFEDGDRRLILAELQVGVSAEI.......................................................................................................................................................................................... 88

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;