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15894673.1-204
Query: gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204), from C.acetobutylicum

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYKIAVLVSGGGTDLQSIIDAIEEGYIKNCIIEAVISDKKGAFAIERAKKHGIKSYTFDRKEYKGTVCDEVLKLLYKKVDLIVLAGFLSILKGDLLNKFKNRIINIHPSLIPAFCGNGMYGMKVHEKAIEYGVKISGCTVHFVDEGTDSGPIILQSAVEVLATDTPDTLQKRVLEAEHKLLPEAVKVLSEGKVQIEGRHVKVIKLast
1 -29.300PF00551.14; AL1L1_RAT/1-180; Formyl transferase  ali follow..  23  1...MKIAVIGQSLFGQEVYCQLRKE---GHEVVGVFTGKADPLGLEAEKDGRAVFKFPRWRARGQALPEVVAKYQALGAELNVLPFCSQFIPMEVINAPRHGSIIYHPSLLPRHRGAS-------NWTLIHGDKKGGFTIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFL.............................. 168
2 -6.890PF10629.4; A7SZG1_NEMVE/12-83; Protein of unknown function (DUF2475 topsan)  ali follow..  21  1..........................................................................................................DPYHIPGYCG------YCPQFKYQIGETFGRTTSCLLTD........................................................... 33
3 -6.170PF02230.11; O84138_CHLTR/11-236; Phospholipase/Carboxylesterase  ali follow..  14.APVIIFCHGYGASADHLTFFPTMCVCANLRPTWVFPHGISSQEITPDTDRLYQQLLDVDFEKPKQALEGLIHELERDRSEVIIGGFS-----------QGAMMTTHLMLSSRLPYRGALICSPNQSWEENASLCGKTPYIQSHGYDD-------PILPYFLGERLYKVLTASLKGEMVSFH...................... 205
4 -5.930PF11039.3; Q57SP4_SALCH/1-151; Protein of unknown function (DUF2824 topsan)  ali follow..  13  47.................................................................................GQFGGIVYY------NEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQ-CVTSFAARKFRHGQMYCA................................................. 113
5 -5.740PF03412.10; Q48872_LACSK/4-142; Peptidase C39 family  ali follow..  12  34.LRNEAKTDLEGTTALGLVKTAENLGFETKAIQA---------DMSLFEVADLPFPFIAHVLKNGELLHYYVVLGIKKDAIIIAVGIAKMTQSQFKSEWTGVALFIAPK............................................................................................... 137
6 -5.620PF13649.1; Q04SF2_LEPBJ/207-318; Methyltransferase domain  ali follow..  11  4......VACGPADEIGEAFSDMVELK--KIHFTLLQDMEALRVAMNTVNQLELEKGISIHVRYINDSVRSMLRIRDLRFDFIYSMGLFDYLTPPVARAVLARLFEM---LRPG........................................................................................... 111
7 -5.580PF13230.1; A1V0D8_BURMS/1-273; Glutamine amidotransferases class-II  ali follow..  1MCQLFGMNCAEPTDVTFSFTGFAA--------GGLTDHHADGWGIAFFEDKACRLF---IDQQSSSTSPIAEMVKRYPIKSKNTIAHIRKATQGHILL------NCHPFMRELWGRH----IFAHNGDLQSYVPDLEGGVYQPVGTTDSEKAFCKLMQGLREAFPSAQPPLPELFEQIGELTRDITRHGVFNFLMSNGQALF.. 184
8 -5.540PF04189.8; Q17EU7_AEDAE/2-294; Gcd10p family  ali follow..  10  83.......IKESGTDNRNIVDDRSTQGLSAEEILKL--REECESSSEVIGKLVENSKSFAAKTEYSQEKYLKRKEKKYFEYVEIRRPSIRLIADVYWRLDADKVMGVRFDTLSQI---SYSGVCGIGRFLLYESGTNGLLPAAFINSI--GAETEAKLVHMHPGNVAQKQAIQAMNFKPEQLNRCISV................. 256
9 -5.440PF05724.6; TPMT_VIBCH/2-217; Thiopurine S-methyltransferase (TPMT)  ali follow..  41.....VLVPLCGKSEDLIWLANQHDSVQGVEL----SQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELDFFTAPVESVDLVYDRAALVALPEEMRAEYAQRVLQL--------PGGRILLVSMDYVQTELSGPPFSVPEAEIRTLFMGCEVRRVYQDTSIDPHLNKRTQAGLSRFAEEVW....................... 211
10 -5.430PF02365.10; Q8LRL7_PETHY/23-151; No apical meristem (NAM) protein  ali follow..  11  12...............EELVRYYLRRKIIGKPFRFQAVTEIDVYKSEPWELAGYSSLKNRDLEWYFFSPVDKKYGNGSRLNRATGQGYWKATGKDRHVRHKSQDIGMKKTLV--HSGRAPDGKRTN............................................................................... 120

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]