current user: public




Query: gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204), from C.acetobutylicum

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200
# Score Template Links and tools%idFirst MYKIAVLVSGGGTDLQSIIDAIEEGYIKNCIIEAVISDKKGAFAIERAKKHGIKSYTFDRKEYKGTVCDEVLKLLYKKVDLIVLAGFLSILKGDLLNKFKNRIINIHPSLIPAFCGNGMYGMKVHEKAIEYGVKISGCTVHFVDEGTDSGPIILQSAVEVLATDTPDTLQKRVLEAEHKLLPEAVKVLSEGKVQIEGRHVKVIKLast
1 -89.400PF00551.17; PUR2_DROME/1154-1336; Formyl transferase  ali follow..  40  1.KRVAVLISGTGSNLQALIDATRDSA--HADVVLVISNKPGVLGLQRATQAGIPSLVISHKDFASREVYDAELLKAARVDLICLAGFMRVLSAPFVREWRGRLVNIHPSLLPKYPG-----LHVQKQALEAGEKESGCTVHFVDEGVDTGAIIVQAAVPILPDDDEDSLTQRIHKAEHWAFPRAL................... 183
2 -6.710PF13304.4; A0ZCH2_NODSP/23-347; AAA domain, putative AbiEii toxin, Type IV TA system  ali follow..  10  187.......LGSTGLGLQAVVKYIKEKEERTFTTALMRRFENNFQGVRYNEKISKLVWEFDFGRKTTVEEFTPDSVSDGFMKAAAISLLASLYRPPSLILLEEIENGVNPGNIQEL-------MHWIWQMTSPTSDGYTSQFIITSH----SPSVLR................................................. 325
3 -5.930PF09029.8; W5LRB5_ASTMX/30-145; 5-aminolevulinate synthase presequence  ali follow..  12  1.................................................................................IIRCPFLSRVPQAFLQQARKSLVSY-PVMMDLASRPLVRAVCSSSTSFQKSQDTVSSTEEFLAAEMGPNSSVVRQASLELQEDVSE..................................... 114
4 -5.740PF10629.7; V8PIG8_OPHHA/19-85; Protein of unknown function (DUF2475 topsan)  ali follow..  25  2...........................................................................................................PGLMPGYRG------HVPNVAFSFGDTYGNTTMKYFQD........................................................... 33
5 -5.710PF01902.15; O28607_ARCFU/1-218; Diphthamide synthase  ali follow..  16  1.MKVAALISGGKDSILALHKVAEKHEV--ISLVGIFPENEDSYMFHVAESLGLPLKKLYVSGEEEKEVDELGQIGEVDADALCIGGIES-LMYEVAEKFEAIIVSVSAMGL----DESFLGRRIDKECIEYSVHLAGEGGEFETLVLDA---LYRFRIKVDSIRK....................................... 202
6 -5.520PF13091.4; B4KIT3_DROMO/73-217; PLD-like domain  ali follow..  19  1.................IIQQINRAVYSIDIAIYTFTNVELLAAFYRALSRGVVIRVITDPEMVCTSGSKILSLFRSGAEVIMFYGSANWTSQGFNGNWENGIITSDKLLLSQF.......................................................................................... 137
7 -5.420PF01126.18; Q9Z3G6_SYNE7/3-205; Heme oxygenase  ali follow..  6KLREGTKKAHTMAENVGFVKCFLKGVVEKNSYRKLVANLYFVYAMEEELERHRDNDKIAGIYFP-----VLNRKTSLERDLAFYYG--QIQPSKAAQSYVARIREVAPELLVGHAYTRYLGDLSGGQILKTNLDGAGTAFYEFEAIEDEKAFKQTYRQAMDTLPVDEATADRIVEEANDAFGMNMAMFQE.............. 203
8 -5.310PF13230.4; Q5P4D2_AROAE/1-272; Glutamine amidotransferases class-II  ali follow..  1MCQLLGMNCNVPTDICFSFAGFQA--------GGVTDHHRDGWGIAFFEGRGVR---VFLDPQPSANSPVAELVRNYPIRSLNVIAHIRKATQGQVR-----LDNTHPFQ------WGRYWIFAHNGNLL-DYAPALTGRFLPVGSTDSEAAFCHILQCLAQRFPDGPPSAVALHETLRELTIEIGQHGEFNYLLSDGEHLF.. 183
9 -5.280PF07739.11; R7B8K9_9ACTN/140-257; TipAS antibiotic-recognition domain  ali follow..  1..........................................FGQEARAFYGDEAIDAANERMLNMSKTAWDAKEELEQRIK-LVLAMMTKDPE--SPESKLVAGMHAQWIKVHWGEKAYSPEAHVSLAEGYLTDPRFVEYYDGSCGAGATEFLRDIIKA............................................ 117
10 -5.180PF02952.15; FUCI_ECOLI/390-554; L-fucose isomerase, C-terminal domain  ali follow..  14  1......LINSGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTFAPRLTGKGPF--DVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCM............................................ 164

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.