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29345429
Query: gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEKENTNGGSVYVTVDGHFKPVHVSMKGTGEKGFLEFMLEDVEKALKETEMPVIGMMYYNVPDMGIVPHLWEGNNDDYLQRLEKAMDGHGIKLHRYLRLSEVVYCLLast
1 -7.140d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]}  ali model 3D-neighbors follow..  10  69IKECQRMGVKVFLALGGPKGTYSACSADYAKD-LAEYLHTYFLSERREGPLGKVALDGIHFD-------IQKPVDELNWDNLLEELYQIKDVYQSTFLLSAAPGCL 166
2 -6.910g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}  ali 3D-neighbors follow..  14  6..................................EQTKSDIRNSKLVVMNXPTHIAIGIYFPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLY.. 76
3 -6.720g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}  ali 3D-neighbors follow..  10  2..................................GSLANNIKKSTVIVKNXPTHIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLD.. 72
4 -6.530d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  81..VPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLY------------RTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCI 173
5 -6.190d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}  ali model 3D-neighbors follow..  11  37YKNCSEMEITFYVITNNQCSKTTVIGYLKGNGTYETQFEGNNIFQPLYITSDKIFFTNKNMDRAGQVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC. 147
6 -6.050d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  11  36DDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDC. 146
7 -5.970d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1...KKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESY........................... 76
8 -5.920d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  37.................DKHTFQVRNMASGGQIARGFRNDQLEAILKYIKPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIRQVKAKGADVILSTPQGRATD.. 124
9 -5.670d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  66..TEGDGPAKFQVTRLSGKKEVVVE-----ATDYLTYAIIDITSLVAGAVHRTMKLY-----------SRSLDDNGEALYNFRKITSDHGFSETDLYILKHDLTCV 153
10 -5.610d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  14  37..SSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIY................................................ 92

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.