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Query: gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILKDTVLFGLFASYADGVRNGEEKLSAAYDDFATLLATLPTDGTNICAQLRRLFYTKIELRGIQETVSTNGMERHVLFDVYIGKALALLDAEEQMMKEVLRHGGTEAMGLKEEAVCRNGKKGSVTLTWNGTDSDLIELVAALMAAGVIGTAEGRELKVVDVIRVFEEVFHLKINALYTKRGKVFDRCTDTTPFIDSLRRSYNRMLDARLALast
1 -5.500d3fysa1 c.119.1.0 (A:1-281) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  43...LDWKSFYEEVKKHNELPTTS----QPPIGELVALYEELGKSYDAVISI------------HLSSGISGTFSSAAAADSMVDNIDVYPFDSEISCLAQGFYALKAAELIKNGASSPEDIIKELEEMKKTVRAYFMVDDLAHLQRGGRLSSAQGSLLKVKPILHFDNKVI---------PFEKIRTRKKAISRIYELLDEDASK....... 223
2 -5.440d2c3na2 a.45.1.0 (A:80-240) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  80..................................................................................................................................TGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPWVLA... 158
3 -5.220d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}  ali model 3D-neighbors follow..  11  54........................................................................................................................................WATAIAVLGRPKAIKTDNGSCF-TSKSTREWLARWGIATGIPGNSQGQAMVERANRL-----LKDKIRVLAEGD.. 123
4 -5.200d1k85a1 b.1.2.1 (A:559-644) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}  ali model 3D-neighbors follow..  11  9....................................................................................................................ASTAQTTSSITLSWTASTDNVGVTGYDVYNGTAATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT................... 86
5 -5.120d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  110..................................................................................................................................ITTRMHQLELLPGV----------GKKMM--------WAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNPQT 173
6 -5.110d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  32....................................................................................................................................ERGRITSLGTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEEQEG 114
7 -5.040d3cera1 c.55.1.0 (A:14-142) automated matches {Bifidobacterium longum [TaxId: 206672]}  ali model 3D-neighbors follow..  13  33....................................................................................................................................RILRVIRLGQDVDKTHRFAD-EALERAYVAAREFAGVIAEHPIDGLRFVATSATRDAENREEFEDEIERILGVRPETEEA 115
8 -4.910d3pv8a1 c.55.3.0 (A:298-468) automated matches {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  13  88......................................................................................................................................IELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRN.. 171
9 -4.850d2wkxa1 a.20.1.1 (A:180-261) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  15..................................................................................................................................PHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----------------RPTLYNGEADAIAEALLEKYGQD.. 82
10 -4.820d3soka_ d.24.1.0 (A:) automated matches {Dichelobacter nodosus [TaxId: 870]}  ali model 3D-neighbors follow..  18  2.......................................................................................................................................TLIELMIVVAIIGILAA--------------------FAIP-AYNDYI-ARSQAAEGLTLADGLKVRISDHLESGEC 56

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.