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29345426
Query: gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILKDTVLFGLFASYADGVRNGEEKLSAAYDDFATLLATLPTDGTNICAQLRRLFYTKIELRGIQETVSTNGMERHVLFDVYIGKALALLDAEEQMMKEVLRHGGTEAMGLKEEAVCRNGKKGSVTLTWNGTDSDLIELVAALMAAGVIGTAEGRELKVVDVIRVFEEVFHLKINALYTKRGKVFDRCTDTTPFIDSLRRSYNRMLDARLALast
1 -5.630d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  12................................................................................................................................SWK--------YFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDI. 91
2 -5.590d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  14................................................................................................................................TWA--------FLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPD. 93
3 -5.320d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  32....................................................................................................................................ERGRITSLGTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEEQEG 114
4 -5.310d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  10  2.......................................................................................................................................TLIELMIVIAIVGILAA--------------------VALPAYQDYT--ARAQVSEAILLAEGQKSAVTEYYLNHGK 56
5 -5.290d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12.......................................................................................................................................EMGLAMEE--GCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKES 86
6 -5.150d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}  ali model 3D-neighbors follow..  21  33............................................................................................................................................LNALANHGYIPH-DGRAISRETLQNAFLNHMGIA...................................... 65
7 -5.140d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}  ali model 3D-neighbors follow..  12  16.........................................................................................................................TTSSITLSWTASTDNVGVTGYDVYNGTAATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT................... 88
8 -5.120d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  29....................................................................................................................................RLKQRVHLADGLGPDNMLSE-EAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIENEEA 111
9 -5.070d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  11........................................................................................................................................LSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKR....................... 63
10 -4.920d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12.......................................................................................................................................ALQECMQH--NFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTES 86

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.