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29345426
Query: gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILKDTVLFGLFASYADGVRNGEEKLSAAYDDFATLLATLPTDGTNICAQLRRLFYTKIELRGIQETVSTNGMERHVLFDVYIGKALALLDAEEQMMKEVLRHGGTEAMGLKEEAVCRNGKKGSVTLTWNGTDSDLIELVAALMAAGVIGTAEGRELKVVDVIRVFEEVFHLKINALYTKRGKVFDRCTDTTPFIDSLRRSYNRMLDARLALast
1 -6.810d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  28..................................................................................YLREAIAMVYHDIELLGSITKYPDIAKKYNTTASRVERAIRHAIEVAWSRGNLESISSLFGY----TVSVSKAKPTN-SEFIAMVADKLRLEHKA................................... 119
2 -5.700d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  17...........................................................................................................................................FLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPD. 93
3 -5.580d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  14..........................................................................................................................................KYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDI. 91
4 -5.300d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  32....................................................................................................................................ERGRITSLGTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEEQEG 114
5 -5.250d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}  ali model 3D-neighbors follow..  11  3............................................................................................................APTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGTAATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT................... 88
6 -5.240d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}  ali model 3D-neighbors follow..  21  33............................................................................................................................................LNALANHGYIPH-DGRAISRETLQNAFLNHMGIA...................................... 65
7 -5.050d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  27..................................................................................................................................NGELRHHPQEIMQIEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTE---IDYINGFLLRRARA... 103
8 -4.920d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  32.......................................................................................................................................QRVHLADGLGPDNMLSE-EAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIE.... 103
9 -4.600d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}  ali model 3D-neighbors follow..  13  88......................................................................................................................................IELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRN.. 171
10 -4.590d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1..........................................................................................................................RSPSPSTQPWEHVNAIQ-----EARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYKQGLRGS--LTKLKGPLTMMAS.... 79

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.