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Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -6.200d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  19  35...........................EGTQMAVFGMGCF-WGAE---KFWTLKGVYSTQVGFAGGYTPNPTYK----VCSGKTGHAE--VRVVFQPEHISFEELLKVFWENH----DPTQGMRQGNDHGSQYR--------AIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITT--DIREGQTFYYAEDYHQQYLSKDPDG.......................................................................................................................................................... 190
2 -5.870d3ceia1 a.2.11.0 (A:1-84) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  16  3.............................................................................................................................................................................................................................................................................................TLRELPFAKDSMGDFLSPVHQTYVNNLNNLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDCLSPK 83
3 -5.690d3o7ba_ c.116.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  2................................................................................................................................................................................................................................GSAFVFLEASLEL---IPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRI---TAGDTTLIEFKDVGLR. 136
4 -5.630d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  1.DVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFPGSTRQASGFRDNYQEL-AVFGSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHF....................................................................................................................................................................................................................................................... 120
5 -5.600d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  18  27.............VPSLEPPYGLRVAQLTDAEMLAE-----WMNRP------HLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDGLHAAIADLSKVNRGFGPLLLPRASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCGEHDTTNRRMAL.............................................................................................................................................................................. 191
6 -5.060d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}  ali model 3D-neighbors follow..  13  4.....................................................................................................................................................................................................................................................................QPLPPTEAAQRAKVSASEILNVKQFIDRKAWPLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSN. 103
7 -4.880d4gwba_ d.58.28.1 (A:) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  23  12.........................................WGMQD--LIRKLPGVIETRVGYTG--GDVPNATYRNH--------------------------------GTHAEGIEIIFDPERISYRRILELFFGTSYRSAIYYVDDEQKRIAQE----TIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQN.................................................................................................................................................................. 140
8 -4.870d4gr6a_ a.280.1.0 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  13  4....................................................................................................................................................................................................................................................................DVQKQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKDHGKIYQEISDENLALMRERLME. 104
9 -4.850d3ka1a_ a.280.1.1 (A:) RuBisCo chaperone RbcX {Thermosynechococcus elongatus [TaxId: 197221]}  ali model 3D-neighbors follow..  4...............................................................................................................................................................................................................................................................KHIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVREHLAEMLPEMLRAGIQQANLQQRAQQLER. 108
10 -4.850d3oiia_ c.116.1.6 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  6.........................................................................................................................................................................................................................SKDKITKRMIVVLAMASLET---------------KISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPLLDSPINKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITD. 142

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.