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29345420
Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -6.540d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  20  47...........................................................................................................................................................................................................................................................................LHLLVVKFGIDLNEDIKSNLQWRPESTSRVPTLFAGNFSVFSAS----KEAHFQERVTNMKHAIENIDTFYKEAEKKLIQVLKGDS.... 136
2 -6.280d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  19  4.SPQEALPGRKEPLVAKHHVNGNRTVEEGTQMAVFGMGCF-WGAE---KFWTLKGVYSTQVGFAGGYTPNPTYK----VCSGKTGHAE--VRVVFQPEHISFEELLKVFWENH----DPTQGMRQGNDHGSQYR--------AIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITT--DIREGQTFYYAEDYHQQYLSKDPDG.......................................................................................................................................................... 190
3 -5.800d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19  1.DVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFPGSTRQASGFRDNYQEL-AVFGSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKL................................................................................................................................................................................................................................................ 127
4 -4.710d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}  ali model 3D-neighbors follow..  13  4.....................................................................................................................................................................................................................................................................QPLPPTEAAQRAKVSASEILNVKQFIDRKAWPLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSN. 103
5 -4.680d1xaka_ b.1.24.1 (A:) Accessory protein X4 (ORF8, ORF7a) {SARS coronavirus [TaxId: 227859]}  ali model 3D-neighbors follow..  26  5............................HYQECVRGTTVI---LKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACA-------DGTRHTYQLRARS................................................................................................................................................................................................................................................................ 67
6 -4.650d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}  ali model 3D-neighbors follow..  10  3...............................................................................................................................................................................................................................................................KKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGLPEMVLSQIKQSNGNHRRSLLE.. 106
7 -4.530d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  18  27.............VPSLEPPYGLRVAQLTDAEMLAE-----WMNRP------HLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDGLHAAIADLSKVNRGFGPLLLPRASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCGEHDTTNRRMAL.............................................................................................................................................................................. 191
8 -4.530d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  1.......................................................................KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQ-----FSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY...................................................................................................................................................................................................................... 67
9 -4.480d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}  ali model 3D-neighbors follow..  12  2.......................................................................................................GMEVLDLVTGPDSVTEIFLNPRMGQPPTPESLTEGGQYY--GWSRGINLATSDTEDSPGNNTLPTWSMAKLQLPNEDLTCDTLQMWEAVSVKTEVVGSGSLLDVHGFNKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYKEEGVVT--IKTITKKDMVNKDQVLNPISKAKLPVEIWHPDPAKNENTRYFGNYTTTTPPVLQFTNTLTTVLLDEPLCKGEGLYLSCVDIMGWRVTRNY.... 263
10 -4.460d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  19  2.....................AQWLTAEERDQLIPGLKAAGWSELS------------------ERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEVYNKVQITLTSHDCGGLTK.............................................................................................................................................................................................................................................. 84

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.