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Query: gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSILNDIWNRIVRRTDRQKVTATEAAGTEKRVYAVATEEGVMLFSDTPKGMKARNSYLQHLADGFFNVAKVSETLRIYEIDLPTKRVAELADNCIEKLSKADLRSTDAQLRRSVVSFTPDKFADRSVLDGGVCWAKFDLRPDFHNFDRLTREFGLGISPRNYDVAALLYISENGYAGIVAADKVHPFSYEYEFRELAEKLEDSMKARMNAPLSAHDFGYAALQKEAREMAADLLQSEFHAKDGEFRLGARISWIERMETLHPMSRPHSEEVKTGKLPETYRRQETPRQKPSDRQRQARHVAPIAPQKKEKKQLILLast
1 -8.110PF07960.9; CBP4_CANAL/5-137; CBP4  ali follow..  33.................................................................................................................................................................................................EQLIARFSPEVKADYERNKELRQQEQKRLIEIVKETSSS-----------------SDPIWKAGPIGSPFEKEQRNLSMELVDAELFHKTKHEEQQKQEIDRANEESKEAERLMQQNK.... 133
2 -8.060PF06936.9; H0XGC8_OTOGA/1-189; Selenoprotein S (SelS)  ali follow..  12  50...........................................................................................................................................................................................KFSTRLRALRQRQLDRAAAAVEILEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNTKKPQEEDNSGPSSVIPKRKSDRKPLRGGGYNP-RPGRRG... 184
3 -7.200PF03064.14; U79_HHV6Z/6-234; HSV U79 / HCMV P34  ali follow..  115.....................................................................................................................................................................................................LQITFVTIAKVSSEPELRNLGDLKFMEKFEKECRALDRKKHDDEHRKRSGKQKEKRKVEDIDKKKEDEKRKQEEKKRNDEDKRPDKKDEFDEPPKEKRQKSHHETKRNLEEQSHE... 229
4 -7.140PF08208.9; M2TIU3_COCSN/219-424; DNA-directed RNA polymerase I subunit RPA34.5  ali follow..  12  119.........................................................................................................................................................................................................................................LKMRFGTIGDSDDEPEPAREIAVLGMPESSKSSKKQKRKHADVNGTETSEAPVKKSKKHQDSEEAKRRAEKKAKKEKK.... 206
5 -7.090PF06959.9; F1PAG8_CANLF/622-825; RecQ helicase protein-like 5 (RecQ5)  ali follow..  17  43...................................................................................................................................................................................................................................QTATELMEKT----QAEERAPQPVQEGKREPPSQPCGLQDEDCSKALPGPRAEAPGSSFHCGGSSPEKTGKSPSKGGPLAKSKKQQLL 129
6 -6.920PF15384.4; PAXX_MOUSE/10-205; PAXX, PAralog of XRCC4 and XLF, also called C9orf142  ali follow..  16.................................................................................................................................................YCERDSGGDGDRDDFNLYVTDAAELWSTCFSPDSLARLKARFGL-SGAEDIHSRFRAACQQQAVTVSLQEDRALITLSGDTPALAFDLSKVPSPEAAPRLQAEHVCNLERRLAAAEETITSPKKNTQPAGTQFLPELDHQRGSSGPGVRRRCPGESLINPGFKSKKP... 187
7 -6.500PF07946.12; C4JQ44_UNCRE/74-436; Protein of unknown function (DUF1682 topsan)  ali follow..  10  253.....................................................................................................................................................................................................NKRTILSIRVPSSTSSTAYASSLPLFHLFLRLTDRLASTG---LRQEVLRKLRTTREEELRKLRRVAEEEKAEERKLTAERLKKEGRDRMLRGMSAEEQRKYLE--KEKEREAKK... 363
8 -6.490PF12737.5; A8N2T2_COPC7/197-610; C-terminal domain of homeodomain 1  ali follow..  11  2...........................................................................................................................................................................................ELQFAFAQVTSNARTLYQKVSESSLAVTDSAVKDMTPELKRQLQSEKRKKLQGEQAAAAYPSPERSPLSLQTHLSPSVSAPSLPERTSPTGKRRLSPTIDSDDERAERSKKR-APVEVSKKRKRRL.. 172
9 -6.460PF09428.8; M1VUD9_CLAP2/100-256; Fungal protein of unknown function (DUF2011 topsan)  ali follow..  10  94...................................................................................................................................................................................................................................................EGQRRQKKRPGKKKRIAERKEMQALKEKNQMETKRALDKEEQLKEKKKRLNRIKK----LRKRAKNKE.... 157
10 -6.420PF15309.4; F6V4S4_MONDO/188-310; ALMS motif  ali follow..  5............................................................................................................................................................................................................................GLQECLERNRPDFISSSGARVKRKLITEERKLQHLLQRERDALFNTTEQQKNQVNSSVSLNRTITKKEMVQRSKRMYEQLPEVRKKREEEQR... 97

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.