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Query: gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSILNDIWNRIVRRTDRQKVTATEAAGTEKRVYAVATEEGVMLFSDTPKGMKARNSYLQHLADGFFNVAKVSETLRIYEIDLPTKRVAELADNCIEKLSKADLRSTDAQLRRSVVSFTPDKFADRSVLDGGVCWAKFDLRPDFHNFDRLTREFGLGISPRNYDVAALLYISENGYAGIVAADKVHPFSYEYEFRELAEKLEDSMKARMNAPLSAHDFGYAALQKEAREMAADLLQSEFHAKDGEFRLGARISWIERMETLHPMSRPHSEEVKTGKLPETYRRQETPRQKPSDRQRQARHVAPIAPQKKEKKQLILLast
1 -6.390PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)  ali follow..  15  48................................................................................................................................................................................................IQRLSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIPK---------GKSDKKPL.. 159
2 -5.430PF14181.1; A4IR04_GEOTN/35-179; YqfQ-like protein  ali follow..  48........................................................................................................................................................................................................................NNVQKMLSVAQNVM--MVQQYGPLIRNLPAMIRIFRELKTADEEDGETKSTESAPAKETKQKPAEREAKKRPVPQANHEDSQEKQIPTTPRPSTPKLYI 145
3 -5.130PF13554.1; C0LP57_9CAUD/5-136; Bacteriophage related domain of unknown function  ali follow..  11  62...................................RIYAGVYVVFPAGTGTQYASELADAIATSDKWLAVKISGAAFQ............................................................................................................................................................................................................................................. 107
4 -4.990PF12737.2; Q9Y7A2_COPCI/208-628; C-terminal domain of homeodomain 1  ali follow..  17  5.............................................................................................................................................................................................EIEFASVLARATSLYDER------SQSTLACKLDNAVRDMTPALLKIEKARKRQEERMSSVTNKRARHAYPTPERSPPAAAELLASPSLSVIDLTYVDESPSIGRKRRRSLRSDDPLCKRSRS... 130
5 -4.870PF12034.3; A4EE97_9RHOB/522-698; Domain of unknown function (DUF3520 topsan)  ali follow..  13  2..............................ALFPIAGDVKVQVFNPAQVAEYRLIGYETRAREDFNNDTVDAGELAIYEVVGSPAQLSDPLRYGANTVAETSDELGFLKLRYKEPGEAVSQLIETPITGSSVPGTEANFAAAIAGFGQLLRDDRFLGNWGYDDAIALANANRG----------EDSFGYRTEAVQLMRLAQSLS............................................................................................................... 177
6 -4.870PF03904.8; YP2A_STAAU/1-230; Domain of unknown function (DUF334 topsan)  ali follow..  14.............................................................................................................................................................................................KNNKENPNTQMNSKSTGTPS-QNSLNNEELSELKRQNKLIVKYLAEIQENQKIREKEQKEITSELKEATKDFRDKSLKIRNDFVDVLQEKLKHVDTEELKDILGRGIYKVREENDRMLQEVKRS.. 139
7 -4.830PF14023.1; B7FP83_PHATC/152-366; Protein of unknown function (DUF4239 topsan)  ali follow..  23...........................................................................................................................................................................................RQVEVLRAINMEAGELRVLESIVAVFPDGDLKDRCRNYLIQYTSRIIAESQPHSGFVGDDFSSINPRRGMDSELNGFLQQLNLFTPDISSHLAEESYAALARLREQRYNRISALEVTYPGLHYAILAA 150
8 -4.750PF08969.6; Q3UZ62_MOUSE/6-113; Domain of unknown function (DUF1873 topsan)  ali follow..  11  4......................................................................................................................................KELYLSSSLKDLNKKTEVKPEKTSTKNY-IHSAQKIFKTAEECRLDRDEERAYELYMKYVAVYNLIKKRPDFKQQQDYYLSILGPANIKKAIEEALSESLKLRY............................................................................. 108
9 -4.710PF11657.3; Q5NWI4_AROAE/1-144; Transcriptional activator TraM  ali follow..  1..........................................................................................................................................MSDKIESIIKIAAKHGIAVGRDD--ILVLQTINERLMQD-----------SAVAQQETLDRFKEELESIAQRWGEDAKSKAERTLNAALTASKETMMKGMQEGTKAAAESARCEVEAAVGRLAGSVRASQR.............................................. 120
10 -4.700PF08803.6; Q665T5_YERPS/4-100; Putative mono-oxygenase ydhR  ali follow..  21  45...................................NEAGGIYLFSDISAAKAYLAMHTARLKSKIFLVNEALSQLD............................................................................................................................................................................................................................................... 93

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.