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29345420
Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -6.110PF05836.7; CH16_DROME/29-138; Chorion protein S16  ali follow..  20  1.............................................................GYGASYGDVVKAAETAEAQASALTNAAGAAASAAKLDGADWNSLNRYGWEQGRPLLAKPYGP----DPLYAAALPPRSFVAEVDPVFKKSQYGGSYGENAYLKTDAKLGVVAI....................................................................................................................................................................................... 110
2 -5.870PF09104.5; BRCA2_RAT/2980-3117; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3  ali follow..  21  48............................................................................................................................................................................................................................................................................HLLVVKFGIDLNEDIKSNLQWRPESTSRVPTLFAGNFSVFSAS----KEAHFQERVTNMKHAIENIDTFYKEAEKKLIQVLKGDS.... 136
3 -5.750PF01625.16; A3LMS3_PICST/17-177; Peptide methionine sulfoxide reductase  ali follow..  15  11.........................................WGVERVFRKQFPVGLVDVKVGYANGIPNVGEVNYEK-VCTGATDFVE--IQIAYEPSEVTAEQLLDIFFRMH----DPTTVNSQGPDVGTQYR--------AILTHEEEDAALAAAFKEDYQVKWYPKD----------KIVTIVEPIQIWYDAED................................................................................................................................................................ 143
4 -5.400PF08779.5; NS7A_CVHSA/16-99; SARS coronavirus X4 like  ali follow..  25  4............................HYQECVRGTTVL---LKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACA-------DGTRHTYQLRA---RSVSPKLFIRQEEVQQELYS........................................................................................................................................................................................................................................... 84
5 -5.250PF02341.10; O86944_9CYAN/1-111; RbcX protein  ali follow..  4...............................................................................................................................................................................................................................................................KQVAKDTAKVLASYLTYQSVRIVIAQLSETNPPLAIWLNEFSTKGKIQDGELYIRELLLENQDLGFRIMTVREYLAHDLPEMVRTGIQQSNMEHRRQHLER. 108
6 -5.230PF14074.1; B4ANP8_BACPU/6-86; Protein of unknown function (DUF4257 topsan)  ali follow..  18  3................................................IIACAIGGVMGILGHVKKKGRLPRMTKKFIYLGFIEDWLVGMIAATLLVLSSNPESSLHLVILSIISGYGG.............................................................................................................................................................................................................................................. 75
7 -5.070PF09902.4; Y2989_BACLD/5-75; Uncharacterized protein conserved in bacteria (DUF2129 topsan)  ali follow..  22  4................................................................................................................................................................................................................................................................................................LIVWLHSLKQAKMLRKFGNVHYVSKRLKYVVVYCNMEDAERIIAKIRSY.................... 52
8 -5.060PF04746.7; Q9Z888_CHLPN/20-120; Protein of unknown function (DUF575 topsan)  ali follow..  18  33.................................................................................................................................................................................................................................................................................................IEWLISWIPRHTVRHFTSDVSSAIKVEQTRGHNCLAPLEAYLSSL----RVPISQEDLGKVHGRTPE. 97
9 -4.950PF03587.9; Q17J58_AEDAE/38-232; EMG1/NEP1 methyltransferase  ali follow..  17  9...............................................................................................................................................................................................................................................................ETVKVGQVFELLNCDDHLSILKKNGRDPGSCRPLMDSPLNRLQVYIKTEKNVLIEINPQTRIPRTFRRFAGLMVQLLHKFSIKASDSPQKLMRVIKNPISD. 121
10 -4.830PF11212.3; Q5E7T4_VIBF1/1-82; Protein of unknown function (DUF2999 topsan)  ali follow..  27  1...................................................................................................................................................................................................................................................................MNPIIQTLKE------HNVSDEQI-----------AEVFQTLTQNPFAAMATIQSLGIPQ--EKLQPLMMLVMSNPALIKEAVEELGLDFSK...... 73

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.