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Query: gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSILIIEDDIVFSRTISNWLVKQGMKTQCVATIAEARRAIAGKPFSLILADMRLPDDNSLSLLEWMRERRCTVPVIIMTNYGEVENAVTAIKLGATDYLRKPVQPDILLELIVGIKEGDSGKPSFYRGESAKAQEMYRQIELIACADISVLLRGASGTGKEHVAHEIHERSHRWNKPYVPVDCGTVPEELAASEFFGHLKGAFTGAESDKAGLFRTADGGTLFLDEIGNLSYRTQVMLLRALQEKRYRPLGDTREYPFDIRLVAATNENLEKAIAEGRFREDLFHRLNEFTIRLPLLAECREDILPLADFFLEEANAELGKRTGGFDREARSRLAAYQWPGNMREMKNTVRGAVLLTPDGERIAAGSLAFSVREADGADASETLALNDAQKEKECIMRALEETGGNRKEAARLLGISRSTLYEKLRKYGFQLast
1 -115.0004l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)  ali model follow..  39  10..NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKSSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS-EGKFIDRGELSCLVNSKGIKNKHKSI----KEIEKEEIIKVLKEVNFNKKLASEILGIPLRTLYRRLKEYGIE 447
2 -106.0003dzd_A mol:protein length:368 Transcriptional regulator (NtrC family)  ali model follow..  39  1.KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEG........................................................................ 363
3 -106.0005ep0_A mol:protein length:396 Putative repressor protein luxO  ali model follow..  36  5.RQVLMVEDTASVAALYKSYLNPLGLNVSIVGTGKEALSFIQDIIPDLILLDLRLPDMTGMEVLERVRKEHGNVPVVIMTAHGSIDIAVEAIRYGAQDFLIKPCEADRLRITVNKALKAESKSNTSFIGNSLPMQAVYRVIESAASSKATVFITGESGTGKEVCAEAIHAASPRHDKPFIALNCAAIPKDLIESELFGHVKGAFTGASTERQGAVEMAHNGTLMLDELCEMDLDLQSKLLRFIQTGTYQKVGSSKMSSVDVRFVCATNRNPWEEVQEGRFREDLYYRLHVIPISLPPLRERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLN-TDDEVKLEMVPPPILE......................................................... 390
4 -96.4001ojl_A mol:protein length:304 TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR  ali model follow..  43  2............................................................................................................................SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL-TGEYISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR.... 304
5 -94.5004qhs_A mol:protein length:267 Flagellar regulatory protein C  ali model follow..  33  3......................................................................................................................GLVPRGSHMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILS-ENGHIQSEHILLEGVDWHD...................................................... 261
6 -92.8002bjv_A mol:protein length:265 PSP OPERON TRANSCRIPTIONAL ACTIVATOR  ali model follow..  34  6............................................................................................................................DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GTSDYPLDDIIIDPFKRRPPEDAIA................................................ 265
7 -90.3005exx_A mol:protein length:343 Transcriptional regulator FleQ  ali model follow..  41  10............................................................................................................................RSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIR-FNSAAIMSLCRHDWPGNVRELANLVERLAIMH-PYGVIGVGELPKKFRHVDDEAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRK.... 343
8 -57.9003n70_A mol:protein length:145 Transport activator  ali model follow..  21  3..............................................................................................................................LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLN-------------------DFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT..................................................................................................................................... 145
9 -50.6003co5_A mol:protein length:143 Putative two-component system transcriptional  ali model follow..  26  6..............................................................................................................................KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMEL-----------------------LQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGS--DGISCEEKLAGLFSESVVRIPPLS..................................................................................................................................... 143
10 -42.2001zy2_A mol:protein length:150 transcriptional regulator NtrC1  ali model follow..  33  2..NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKEN.................................................................................................................................................................................................................................................................................................................. 125
11 -40.9003crn_A mol:protein length:132 Response regulator receiver domain protein, C  ali model follow..  32  3LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFDIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKE..................................................................................................................................................................................................................................................................................................................... 125
12 -40.4003jte_A mol:protein length:143 Response regulator receiver protein  ali model follow..  25  3LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLMEN.................................................................................................................................................................................................................................................................................................................. 130
13 -39.7001dc7_A mol:protein length:124 NITROGEN REGULATION PROTEIN  ali model follow..  28  4.GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ....................................................................................................................................................................................................................................................................................................................... 123
14 -39.5003cfy_A mol:protein length:137 Putative LuxO repressor protein  ali model follow..  25  5.PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDL................................................................................................................................................................................................................................................................................................................... 128
15 -38.6002jvj_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  26  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
16 -38.4002jvi_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  25  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
17 -38.1002jvk_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  24  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
18 -38.0003q15_C mol:protein length:126 Sporulation initiation phosphotransferase F  ali model follow..  25  6.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKS....................................................................................................................................................................................................................................................................................................................... 125
19 -37.8001l5y_A mol:protein length:155 C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL RE  ali model follow..  22  5..SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENGLKLAAALE......................................................................................................................................................................................................................................................................................................... 149
20 -37.6003hdv_A mol:protein length:136 Response regulator  ali model follow..  25  8.PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLYQKRIGLMITDLRMQPESGLDLIRTIRASEAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE....................................................................................................................................................................................................................................................................................................................... 129
21 -37.5002qr3_A mol:protein length:140 Two-component system response regulator  ali model follow..  20  3LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDGKKE.................................................................................................................................................................................................................................................................................................................. 133
22 -36.4003hdg_A mol:protein length:137 uncharacterized protein  ali model follow..  23  7ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAKEG................................................................................................................................................................................................................................................................................................................... 131
23 -36.4003rqi_A mol:protein length:184 Response regulator protein  ali model follow..  19  8.KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEHIQRVLAENNNNISATARANMHRRTLQRKLAKKPVRQ................................................................................................................................................................................................................................................................. 184
24 -36.2004d6x_A mol:protein length:148 BACTERIAL REGULATORY, FIS FAMILY PROTEIN  ali model follow..  25  17.ADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLVFLDIWLQGLDGLALLDEIKKQHPELPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILVAERALETSKLKLE................................................................................................................................................................................................................................................................................................................... 142
25 -35.8003a0r_B mol:protein length:116 Response regulator  ali model follow..  19  1MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDMSSW--AADEYVVKSFNFDELKEKVKKLLS.......................................................................................................................................................................................................................................................................................................................... 116
26 -35.7002qxy_A mol:protein length:142 Response regulator  ali model follow..  21  5.PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRVTV................................................................................................................................................................................................................................................................................................................... 127
27 -35.6004qpj_C mol:protein length:152 Cell cycle response regulator CtrA  ali model follow..  25  30..RVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGYEVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRR......................................................................................................................................................................................................................................................................................................................... 146
28 -35.4001d5w_A mol:protein length:126 TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ  ali model follow..  22  6...VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLVALE.................................................................................................................................................................................................................................................................................................................... 126
29 -35.4004h60_A mol:protein length:120 Chemotaxis protein CheY  ali model follow..  23  2MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKARFDVIISDVNMPVMTGFEFVKAVRMQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL........................................................................................................................................................................................................................................................................................................................... 120
30 -34.9004lzl_A mol:protein length:124 Response regulator  ali model follow..  20  3.KRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRD....................................................................................................................................................................................................................................................................................................................... 122
31 -34.5004q7e_A mol:protein length:129 Response regulator of a two component regulat  ali model follow..  23  6KPRILLVEDDEGLGETLKERLEQDKYRVEWAKTISEAENLYRPNAFDLVVLDLRLPDGNGFDLAEMIVKKEKDLPFLFLTAQAGAQERLRGFELGAAEFIPKPFHLKEFLIRLERVISLTR....................................................................................................................................................................................................................................................................................................................... 126
32 -34.2002pkx_A mol:protein length:121 Transcriptional regulatory protein phoP  ali model follow..  20  2..RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS....................................................................................................................................................................................................................................................................................................................... 120
33 -33.7004dn6_A mol:protein length:146 Putative pilus assembly protein CpaE  ali model follow..  15  14MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQGLDAFDILMIDGVALDTAELAAIEKLSRLHPGLTCMLVSADASSQTLLEAMRAGVRDVLRWPLEPRALDDALKRAASQCAQRD.................................................................................................................................................................................................................................................................................................................... 140
34 -33.7003w9s_A mol:protein length:131 OmpR family response regulator in two-compone  ali model follow..  30  2..KILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHNNQGL................................................................................................................................................................................................................................................................................................................... 124
35 -33.6001m5t_A mol:protein length:124 cell division response regulator DivK  ali model follow..  24  2.KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQPA...................................................................................................................................................................................................................................................................................................................... 124
36 -33.5004ja2_A mol:protein length:122 Response regulator  ali model follow..  24  3.KKVLLVDDSAPIRKMVSFVLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLNE......................................................................................................................................................................................................................................................................................................................... 122
37 -33.5002qzj_A mol:protein length:136 Two-component response regulator  ali model follow..  25  5.TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSYVN................................................................................................................................................................................................................................................................................................................... 127
38 -33.4001mvo_A mol:protein length:136 PhoP response regulator  ali model follow..  20  4.KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIRAPSSEMKNDEM.......................................................................................................................................................................................................................................................................................................... 136
39 -33.4002rjn_A mol:protein length:154 Response regulator receiver:Metal-dependent p  ali model follow..  14  9..TVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKSRFLLKPWEDEDVFKVVEKGLQLAFLREEN.................................................................................................................................................................................................................................................................................................................. 133
40 -33.3003lte_A mol:protein length:132 Response regulator  ali model follow..  22  7.KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE......................................................................................................................................................................................................................................................................................................................... 125
41 -33.3003eod_A mol:protein length:130 Protein hnr  ali model follow..  30  8.KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVDLNRLREMVFACLYPSM....................................................................................................................................................................................................................................................................................................................... 128
42 -33.2003t6k_A mol:protein length:136 Response regulator receiver  ali model follow..  23  5.HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTIETP................................................................................................................................................................................................................................................................................................................... 130
43 -33.2003hv2_A mol:protein length:153 Response regulator/HD domain protein  ali model follow..  18  16..EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEYRYLSKPWDDQELLLALRQALEHQHSERER.................................................................................................................................................................................................................................................................................................................. 140
44 -33.1003gt7_A mol:protein length:154 Sensor protein  ali model follow..  24  7AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTEE................................................................................................................................................................................................................................................................................................................... 133
45 -33.1004dad_A mol:protein length:146 Putative pilus assembly-related protein  ali model follow..  16  14MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCAQRD.................................................................................................................................................................................................................................................................................................................... 140
46 -32.9003c3m_A mol:protein length:138 Response regulator receiver protein  ali model follow..  18  3LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIAA................................................................................................................................................................................................................................................................................................................... 129
47 -32.9003cnb_A mol:protein length:143 DNA-binding response regulator, merR family  ali model follow..  21  9.FSILIIEDDKEFADMLTQFLENPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSE................................................................................................................................................................................................................................................................................................................... 136
48 -32.9003dge_C mol:protein length:122 Response regulator  ali model follow..  25  3.KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLNE......................................................................................................................................................................................................................................................................................................................... 122
49 -32.7003n53_A mol:protein length:140 Response regulator receiver modulated diguany  ali model follow..  24  3LKKILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD................................................................................................................................................................................................................................................................................................................... 128
50 -32.6001nxo_A mol:protein length:120 DNA-binding response regulator  ali model follow..  24  1MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ....................................................................................................................................................................................................................................................................................................................... 120
51 -32.5003cg4_A mol:protein length:142 Response regulator receiver domain protein (C  ali model follow..  12  8.GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQTG................................................................................................................................................................................................................................................................................................................... 133
52 -32.4001zh2_A mol:protein length:121 KDP operon transcriptional regulatory protein  ali model follow..  27  1MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ--SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS....................................................................................................................................................................................................................................................................................................................... 120
53 -32.3002jba_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY  ali model follow..  24  3.RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
54 -32.3002jb9_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY  ali model follow..  23  3.RRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWMLPGGSGIQFIKHLKRESRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
55 -32.3001b00_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY  ali model follow..  25  3.RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
56 -32.2001p6q_A mol:protein length:129 CheY2  ali model follow..  22  8..KVLIVDDQVTSRLLLGDALQQLGFKITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGALK....................................................................................................................................................................................................................................................................................................................... 129
57 -32.2003i42_A mol:protein length:127 Response regulator receiver domain protein (C  ali model follow..  20  3LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALEKTSKFVAVSGFAK-NDLGKEACELFDFYLEKPIDIASLEPILQSIE........................................................................................................................................................................................................................................................................................................................... 120
58 -32.2002zay_A mol:protein length:147 Response regulator receiver protein  ali model follow..  16  8WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYEDLS................................................................................................................................................................................................................................................................................................................... 134
59 -32.1003grc_A mol:protein length:140 Sensor protein, Kinase  ali model follow..  23  7.PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRDLAIVVVSANAEGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEGKE................................................................................................................................................................................................................................................................................................................... 133
60 -31.9003f7n_A mol:protein length:128 Chemotaxis protein cheY  ali model follow..  23  6..KFLVVDDESTMRRIVRNLLKELGFNVEEAEDGVDALNKLQAGGYGFVISDWMMPNMDGLELLKTIRADGSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM...................................................................................................................................................................................................................................................................................................................... 128
61 -31.8003kto_A mol:protein length:136 Response regulator receiver protein  ali model follow..  22  9...IYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK....................................................................................................................................................................................................................................................................................................................... 128
62 -31.4002zwm_A mol:protein length:130 Transcriptional regulatory protein yycF  ali model follow..  23  3.KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTLE.................................................................................................................................................................................................................................................................................................................... 124
63 -31.3003cu5_A mol:protein length:141 Two component transcriptional regulator, AraC  ali model follow..  19  2SLRILIVDDEKLTRDGLIANINWKALSIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQHQAQQDSEG............................................................................................................................................................................................................................................................................................................. 135
64 -31.3005e3j_A mol:protein length:132 Response regulator RstA  ali model follow..  27  9LPKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLTVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDKTVE................................................................................................................................................................................................................................................................................................................... 132
65 -31.1004uhj_A mol:protein length:136 TRANSCRIPTIONAL REGULATORY PROTEIN CPXR  ali model follow..  26  1MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ................................................................................................................................................................................................................................................................................................................... 123
66 -31.0003eqz_A mol:protein length:135 Response regulator  ali model follow..  13  3LNRVFIVDDDTLTCNLLKTIVEPIFGNVE-AFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA....................................................................................................................................................................................................................................................................................................................... 127
67 -30.9004nic_A mol:protein length:128 DNA-binding transcriptional regulator RstA  ali model follow..  24  5.NKIVFVEDDPEVGTLIAAYLGKHDMDVVVEPRGDRAEEVIAREKPDLVLLDIMLPGKDGMTLCRDLRGQW-QGPIVLLTSLDSDMNHILSLEMGASDYILKTTPPAVLLARLRLHLRQH........................................................................................................................................................................................................................................................................................................................ 122
68 -30.8003snk_A mol:protein length:135 Response regulator CheY-like protein  ali model follow..  19  15.KQVALFSSDPNFKRDVATRLDALAYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTGNQ....................................................................................................................................................................................................................................................................................................................... 135
69 -30.6002j48_A mol:protein length:119 TWO-COMPONENT SENSOR KINASE  ali model follow..  23  2.GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQPHPPLVLFLGEPPVDPLLTA---QASAILSKPLDPQLLLTTLQGLCPPN........................................................................................................................................................................................................................................................................................................................ 119
70 -30.5004hnq_A mol:protein length:124 Chemotaxis protein CheY  ali model follow..  25  6..KILIVDDFSTMRRIVKNLLRDLGFNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEEHLPVLMITAEAKREAIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE.......................................................................................................................................................................................................................................................................................................................... 124
71 -30.3001zgz_A mol:protein length:122 TorCAD operon transcriptional regulatory prot  ali model follow..  27  3.HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID....................................................................................................................................................................................................................................................................................................................... 121
72 -30.2003gwg_A mol:protein length:129 Chemotaxis protein cheY homolog  ali model follow..  24  7..KLLVVDDSSTMRRIIKNTLSRLGYEVLEAEHGVEAWEKLDANDTKVLITDWNMPEMNGLDLVKKVRSDSKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND....................................................................................................................................................................................................................................................................................................................... 129
73 -30.2001yio_A mol:protein length:208 response regulatory protein  ali model follow..  17  7...VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ----ARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVT-----VKVHRHNIMQKLNVRSL............................................................................................................................................................................................................................................ 190
74 -30.1003nhm_A mol:protein length:133 Response regulator  ali model follow..  18  5.PKVLIVENSWTMRETLRLLLSG-EFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSELKHIPVIFVSGYAP-RTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAE..................................................................................................................................................................................................................................................................................................................... 126
75 -30.0002hqo_A mol:protein length:123 Putative TRANSCRIPTIONAL REGULATOR  ali model follow..  21  2..RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYSIKALVARIEARLRFWG....................................................................................................................................................................................................................................................................................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.