current user: public




Query: gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280
# Score Template Links and tools%idFirst MEWGVRFYVLSKQEWKQQTIDRCGQFYCLVPSNAGFHVYLFVTMDTGENAVFVFPPHFFIRYRERYWGKHSTLSGKILRKTYLKDNLVMRYGLQPGSEERVTGARIYSASSHGVALGIVLNDEAYLFKTFITYAMTKGEQIPLYMQEKLSMERAQVEYYNTGRLADLVELEERDRKRREMLMAEERRREEKEKRRAAEPGEAYFYVEGPLTLIMPDEEIQEENTGFWQRGTTMFCDSKLIEESQREMRELASVEARIQELKNIPQKAEEKKGVFKRLFGRYFLast
1 -8.6901mv3_A mol:protein length:213 Myc box dependent interacting protein 1  ali model follow..  26  152..................................................................................................................................................................................................TATDTDELQL--AGDVVLVIPFQNPEEQDEG-WLMG--------VKESDWNQHKKLEK-----------------CRGVFPENF.... 208
2 -8.3403eiv_A mol:protein length:199 Single-stranded DNA-binding protein 2  ali model follow..  22  3.......................................................................................................................................................................................................GETVITVVGNLV---DDPELRDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKR...... 96
3 -7.5304jc5_A mol:protein length:200 Transmembrane protein 173  ali model follow..  25  1...............................................................................................................................................................................................EKKLNVAHGLAWSYYIGYLRLILPG--LQARIRMFNQLHNNMLSGAGLFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVY.... 91
4 -7.3804by6_C mol:protein length:262 GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION S  ali model follow..  15  168...............................................................................................................................................................................................ARIFMKFDLDTLFFIQGSYEQFLAARELKNRNWLFWEEESWRYFDYKKSWLARRCGNDFVYNEEDFEKL...................... 262
5 -7.1805apa_A mol:protein length:220 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE  ali model follow..  16  119.......................................................................................................................................................................................................GQIKYSIMHPLGLVIPKEGCKANETKTWEEGKVLIFDDSFEHEVWQD-----ASSFRLIFIVDVPELTPQQRRSLPAI..... 214
6 -7.0804yp1_A mol:protein length:210 Stimulator of interferon genes protein  ali model follow..  25  15...............................................................................................................................................................................................EKKLNVAHGLAWSYYIGYLRLILPG--LQARIRMFNQLHNNMLSGAGLFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVY.... 105
7 -6.9904f5d_A mol:protein length:256 Transmembrane protein 173  ali model follow..  20  27...............................................................................................................................................................................................KGNFNVAHGLAWSYYIGYLRLILPE--LQARIRTYNQHYNNLLRGA-LLPLDCGVPDNLSMADPNIRFLDKLPQQTADRAGIKDRVY.... 117
8 -6.9404qxq_A mol:protein length:188 Stimulator of interferon genes protein  ali model follow..  22  3.....................................................................................................................................................................................................AHGLAWAYYIGYLRLILPE--LQARIRTYNQHYNNLLRGAVLLPLDCGVPDNLSMADPNIRFLDKLPQQTGDRAGIKDRVY.... 87
9 -6.7504ef4_A mol:protein length:265 Transmembrane protein 173  ali model follow..  22  36.....................................................................................................................................................................................................AHGLAWSYYIGYLRLILPE--LQARIRTYNQHYNNLLRGAVLLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY.... 120
10 -6.6501vhi_A mol:protein length:142 EPSTEIN BARR VIRUS NUCLEAR ANTIGEN-1  ali model follow..  18  3...............................................................................................................................................................................................HMGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPQPGPLRESIVCYF 97

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 4 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]