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Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -6.7204d7l_A mol:protein length:240 PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRA  ali model follow..  16  34......GPHPVLPNPQPHAVLGTLRGQPGTETIYIGIGCY-WGAEK--LFWETPGVVYTSVGFAGGITPNPTYR----TCTGRTNHTE--VEVVYDPTQVTFDELVVKAMEAH----DPTQGYRQGNDTGTQYR----SAIYTAGPNAEQQAQRAREIVEHYAPKLAAAGLGRITTE.................................................................................................................................................................................... 189
2 -6.7202ghi_A mol:protein length:260 transport protein  ali model follow..  16  37......................................................................................................KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALKKWDTIVGNK----------MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII---IAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQSGGND.............. 259
3 -6.1803pfy_A mol:protein length:185 OTU domain-containing protein 5  ali model follow..  10  15YNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDGFIIKQMKEDGACLFRAVADQVY-QDMHEVVRKHCMDYYFSNYV-TYINRKRKNNCGNHIEMQAMA--NRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSV..................................................................................................................................................................................................................... 173
4 -6.0801lj2_A mol:protein length:110 NONSTRUCTURAL RNA-BINDING PROTEIN 34  ali model follow..  20  19............................................................................................................................................................................................................................................................................QVYNNKLERDLQNKIGSLTSSIEWYLRELDPEIKADIEQQINSIDAINPLHAFDDLESIRNLISDYDKMFKGLIQRSNYQYSFGS.... 109
5 -6.0303if4_A mol:protein length:119 Integron Cassette Protein Hfx_Cass5  ali model follow..  20  3.SSSSGRENLYFQGMKQEFVAAIEIDGTGRIHVTPGESQFPY------IYREAMEVSWNESTRSLHSPVPREWSYAQWLQQIFAAASEQGVKLVLG-PNTRWVNVP........................................................................................................................................................................................................................................................... 100
6 -5.8901yk3_A mol:protein length:210 Hypothetical protein Rv1347c/MT1389  ali model follow..  17  36.............VPSLEPPYGLRVAQLTDAEMLAE-----WMNRP------HLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDGLHAAIADLSKVNRGFGPLLLPRASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCGEHDTTNRRMAL-YALEAPTTA.................................................................................................................................................................... 209
7 -5.8103o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas  ali model follow..  15  14.........................................................................................................................................................................................................................NLYFQGMGSAFVFLEASLEL---IPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGL------MEKLFEETAGDTTLIEFKDVGLR. 155
8 -5.7401ri7_A mol:protein length:171 Putative transcriptional regulator  ali model follow..  15  23..............................................................................................................................................................................................................................DKKIIKILQNDGKAPLREISKITGL--------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVE--DYDMVVKIRT-SEELNNFLDLIGSIPGVEGTHTMIV.. 152
9 -5.6702l90_A mol:protein length:212 Peptide methionine sulfoxide reductase  ali model follow..  19  9.SAEEALPGRTEPIPAKHHVSGNRTVEEGTQMAVFGMGCF-WGAE---KFWVLKGVYSTQVGFAGGHTRNPTYK----VCSEKTGHAE--VRVVYRPEHISFEELLKVFWENH----DPTQGMRQGNDFGTQYR--------AVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITT--DIREGQVFYYAEDYHQQYLSKNPDG.......................................................................................................................................................... 195
10 -5.6701fva_A mol:protein length:217 PEPTIDE METHIONINE SULFOXIDE REDUCTASE  ali model follow..  19  18.SPQEALPGRKEPLVAKHHVNGNRTVEEGTQMAVFGMGCF-WGAE---KFWTLKGVYSTQVGFAGGYTPNPTYK----VCSGKTGHAE--VRVVFQPEHISFEELLKVFWENH----DPTQGMRQGNDHGSQYR--------AIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITT--DIREGQTFYYAEDYHQQYLSKDPDG.......................................................................................................................................................... 204

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.