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Query: gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSILNDIWNRIVRRTDRQKVTATEAAGTEKRVYAVATEEGVMLFSDTPKGMKARNSYLQHLADGFFNVAKVSETLRIYEIDLPTKRVAELADNCIEKLSKADLRSTDAQLRRSVVSFTPDKFADRSVLDGGVCWAKFDLRPDFHNFDRLTREFGLGISPRNYDVAALLYISENGYAGIVAADKVHPFSYEYEFRELAEKLEDSMKARMNAPLSAHDFGYAALQKEAREMAADLLQSEFHAKDGEFRLGARISWIERMETLHPMSRPHSEEVKTGKLPETYRRQETPRQKPSDRQRQARHVAPIAPQKKEKKQLILLast
1 -7.410[Z] KOG3756 Pinin (desmosome-associated protein)  ali follow..  599.................................................................................................................................................................................................GSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR... 717
2 -7.170[WV] KOG4848 Extracellular matrix-associated peroxidase  ali follow..  12  117.....................................................................................................................................................................................................LKMLEKNRAQKAEELARINAREEDIAKKMEKLTQWKADLHAKIAKREADAAAAIQRKERLVEEVRRHFGFKVDTRDERFKEMLEQKEKEDKKKQKEAKRKAKEEKMMAKLVEKAS... 231
3 -7.080[S] KOG4705 Uncharacterized conserved protein  ali follow..  11  137.....................................................................................................................................................................LLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDKNKKKIGKV.. 312
4 -6.900[K] KOG4134 DNA-dependent RNA polymerase I  ali follow..  11  212.................................................................................................................................................................................................EEVTENGTEEAAKKPKKKKKKKDPETYEVDSGTTKLADDADDTPMEESALQNTNNANGIWEEEPKKKKKKKKHQEVQDQDPVFQGSDSSGYQSDHKKKKKKRKHSEEAEFTPKRKGKSNFL. 338
5 -6.870[S] KOG2637 Uncharacterized conserved protein  ali follow..  15  316.....................................................................................................................................................................................................EPLEDQDLPMNELDESEEEEMITVVLEEAKEKCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKGLTAKQTERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAI. 434
6 -6.800[R] KOG4538 Predicted coiled-coil protein  ali follow..  12  58........................................................................................................................................................................................................................................................EKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRLANERRSEVVQVIKNPAKKKKQM.. 126
7 -6.790[S] KOG4570 Uncharacterized conserved protein  ali follow..  302.................................................................................................................................................................................................EAGVKNILESIGEVEEAKEKLSDIILEHLKKIQVSEEDSLCAVQTKLFGEWNERRQALAKSQAQKVLLRLRQDEIRGELKQLDEQEEQMSKNRLIWEKRAAENTQIDEESKQRHKKKESTV. 424
8 -6.670[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  574.................................................................................................................................................................................................PEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQ-APPSSQQNNIIV 701
9 -6.660[A] KOG3080 Nucleolar protein-like/EBNA1-binding protein  ali follow..  15  151..............................................................................................................................................................................................DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIRE------QRKMGKMLAKQTKVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRNKKF------KKKGLKR... 264
10 -6.450[S] KOG4484 Uncharacterized conserved protein  ali follow..  12  222.....................................................................................................................................................................................................KEAASSASGRATSGMSSDERNQKQNSDRALMPPPQARFESNSRKNLYVQRNEMPSSSRNNTSNRRSESSYNARASAANSYSSQSSNLSSNSDAHKPKRKRR------PKKK-KQQVGL 332

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]