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Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -5.260[S] COG4471 Uncharacterized protein conserved in bacteria  ali follow..  14  2..........................................................................................................................................................................................................................................................................................ENRRQGMVVYLHSLKQSKMLRKFGNVHYVSKRLKYVVLYCDMDQIEKTMDKIASYFVKKVEPSYKPFLKLEFES. 76
2 -4.950[O] KOG1635 Peptide methionine sulfoxide reductase  ali follow..  18  17...........................PGNQFTQFGAGCF-WSVE---AYQRVPGVTQTEVGYSQGITHDPSYK----VCSGTTNHAE--VRVQYDPKECSYQSLLDLFWSKH----DPTTLNRQGND-------VGTQYRSGIYFYNPEQEKLARESLERHQQQVDR------------KVVTEILPAKKFYRAEEHHQQY........................................................................................................................................................... 161
3 -4.890[O] KOG0855 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes  ali follow..  22  59.DVNELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFPGCTRQACGFRDNYQEL-AVFGSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHF....................................................................................................................................................................................................................................................... 178
4 -4.740[M] COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase  ali follow..  14  3................................................VGIFADGGYEKGMGHVVRMKRLAEGLKQRCLITFYTNQDSEAFLHEEHWQVIV-QQHEFILREIKSKKLDLLLFDILGAPAELLKKIKTETDAKIVLFEEKNGKSIQYSDAVINGIYGDIRSRVYVQGNTRIYEGPDYLILHPAFQAAREDYTLKK-DCRNILVALGGSDPKQLIFKVLAAADQVPDIKDKNMMFVMGSASPHQEA-RRIEKKPQYKMIEQNDMAGLMKQADAAIVAGISLYEAICIGVPCLVLSQVEHQTATAKTFADQGAALDLVPDETLIYQMSRIMSSYPLRLSLHKGGRPLVDG 321
5 -4.720[J] KOG3073 Protein required for 18S rRNA maturation and 40S ribosome biogenesis  ali follow..  18  38...............................................................................................................................................................................................................................................................ETAKVGGEYAILSSDKHANFLRKQKKDPADYRPLLDSPLNRLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVSN. 150
6 -4.510[UR] KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins  ali follow..  17  42............ALPQVAVVGSQSSGKSSVLEALVGRDFLP-CTRRPLRLQGGSDEEWGEFLHHDPVRRIYDFS-----------EIRREIEAETNRVSGENKGVGLKIFSPNVLDISLV-SDIEARIRTMILTYIKEPSCLIL----------AVSPANTDLANSDALQIANADPDGHIGVITKLDIMDRGTDARNH------LLGKTIPLRLG----------YVGVVNRSQEDILMNRSIKDALVAEERSRPVYSGLVPQLAKKLNQVLV-------QHIKALLPSLKSRINNALFATAKEYESYGDITESRGGQGA-----LLLSFITKYCEAYSSTLEGKSKEMSTSELSGG 379
7 -4.370[T] KOG4039 Serine/threonine kinase TIP30/CC3  ali follow..  17  8..........................................................................................................................................................................................IDSDDSF-DAGAPTSSHTMDRKSIIEKYQKLKEESKKLDDLAVEVRSLFMICKQMEYTKRIDRIVATYGEIRYLHDGTILL----LVTIHN-------TNQPMIDWVISINPTSIFPNVGSLLPGIRKTDPPVLLQLSLLRTYQLGGIVKCFKVKLDPILVT......... 178
8 -4.040[S] COG1756 Uncharacterized conserved protein  ali follow..  10  2............................................................................................................................................................................................................................SEKKRLHLIIADAELET---VPEQILDHPAIVNYAKRRKRKPEKIILDSTYHHAALKQLEDGERRGRPALDSILNKLRVYVHTRNDYVIYIKPETRLPRNYNRFIGLMESLFEKGAVPEDLELLRLERKTLQELIN. 146
9 -4.040[R] COG0790 FOG: TPR repeat, SEL1 subfamily  ali follow..  11  188.........................................................WSQDGDPQMDYQMGRLTLNDFSGRYADEPYQARPASLKWFRAAAEKGVVEAQSL-----LGGIYSGGEGDEWGI-----KPDIQEAQKYGQAAKQGDSDAQIALGKIYYSGAT---GRTDYAKAL--------ALFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCDKAWSYYKKASRYVGKKVEEKIFLSKCAADIQSRKNNADALPKVTLKKERIFSRGITAKPKECALIFQIGTDKIRNMANLHITLELKNADGMATEETMQNHDVDPLVTPYDLPLYTQDFCHGIGDIHFT..... 476
10 -3.990[T] KOG0697 Protein phosphatase 1B (formerly 2C)  ali follow..  14  1............................................................MGAFLDKPKMEKHNAQGQGNGLRYGEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKY-------CEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHM--------------------RVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGL--LCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPIERSEEDDQFI---------LACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVD. 273

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.