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anford Burnham Prebys Medical Discovery Institute

Query: gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599), from B.fragilis

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTAIIVISEAGIALAKTLEQELPESEIFSTGTDTDCHSISNLQEAVPEIFHKFDAIIFIGAMGICIRAIAPHIEDKHKDPAVVCVDSTGRYAVSVLSGHIGGANGLTRYVASILGAEPVITTRSDRTGLWALDTLGKKYGWQTVPAESSDMNHLITLFVDCKPTALLLDIRDEGTTQLEHTLPPHVDVFYKFEDMDLRKYDLLLLVTPFIYNTSDTPALYYVPPVLHMGVGLARDAHPVDTVITHLMDVVVQANMIPLAIRTVSSIEEKKDEPVLKLLAEAYQTRLYTASQLSKIEVPTPSEVVNKHMGTPSVSEASALLSSGGGPLLLPKQKGANFTVAIAMDAASVRQGHIEIVGAGPGDPELISVRGRHFLEEADLILYAGSLVPRELTECAKAGATIRSSASMTLEEQFALMKEFYDRGQLVVRLHTGDPCIYGAIQEQMNFFDQYGMHYHITPGISSFQAAAAALQSQFTIPERVQTIILTRGEGRTPMPEKEKLSLLARSQSTMCIFLSAGVVDQVQRELLEHYPPTTPVAACYHLTWKDERIFRGQLQDLAKIVNENHLTLTTMIVVGDAIDNREGLSRLYSHQFKHLFRKLast
1 -60.300d1cbfa1 c.90.1.1 (A:21-251) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}  ali model 3D-neighbors follow..  44  2................................................................................................................................................................................................................................................................................................................................................................KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKEFINGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALD................... 230
2 -55.700d3ndca1 c.90.1.0 (A:1-233) automated matches {Rhodobacter capsulatus [TaxId: 272942]}  ali model 3D-neighbors follow..  37  2................................................................................................................................................................................................................................................................................................................................................................TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRSAMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLG-AELERTALILVGRSLATE................. 231
3 -48.300d3eeqa2 c.152.1.1 (A:10-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  20  6RGICIISASEDAFSAGETIKEKLKSFEIPV-------VHYRYKDAEIETIWKCYDAIVFVMALEGATRIVCKYAKSKTEDPAIVCIDDKINYVIPLLGGH-WGANDIARELSVILNSTPIITTAAEIKGKLSIERIANILIAKIINPE--NIVKINAALLRDESICIDGID-------VNVNFPENIKV---------NSEECSYIISLRGDKEYK-DKIVVWLKPL.................................................................................................................................................................................................................................................................................................................................................................................... 205
4 -43.300d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  25  2...........................................................................................................................................................................................................................PLPIPSLLIAGIGCRRGCS-AEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVLAPAVLHDYELLSPSAVALRETGCSSVAEAAALALAGRADLLGAKRSDDRASIALARLLTER.......................................................................................................................................................................................................................................................... 139
5 -37.400d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  28  1.................................................................................................................................................................................................................................VTVAGIGCRKGAA-SDAIIAAVRAAERAFGV---TVDYLATAPLKADEAGLAEAAKGLSLSLVAQERLEAVATMTFSQASLDHSGSPSVSEAAALAAAGGARLVAPRLVVGDVTVAIAMTS............................................................................................................................................................................................................................................................. 122
6 -36.600d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  24  2..............................................................................................................................................................................................................................................................................................................................................................RGKVYLVGAGFGGPEHLTLKALRVLEVAEVVL-HDRLVHPGVLALAKGELKEGYGGKTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALG----LPLTHRGLARSFA---------HDPALPLPRADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGLGE--GLPSPALLVVGKVVG................... 223
7 -35.300d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  23  2..................................................................................................................................................................................................................................ISIGIGSKKDVK-MEEIRDGIYKVLERLNLKRERIGIIASI-----REEVKKIADEFNVRFVNEEEINNFMNPTPPSKTLIEVGLKGVAEISALIAGGNSKLILRKIASRNSTIAVATYE............................................................................................................................................................................................................................................................. 121
8 -35.100d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  22  1...............................................................................................................................................................................................................................................................................................................................................................GEVVLVGAGPGDAGLLTLKGLQQIQQADIVV-YDRLVSDDIMNLVRRDADRVGYHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSG----IPLTHRDYAQSVRLVTGHLKTGGELENLAAEKQTLVFYMGLNQAATIQEKLIAFMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVA................... 231
9 -32.600d2z6ra_ c.90.1.1 (A:) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  1................................................................................................................................................................................................................................................................................................................................................................VLYFIGLGLYDERDITVKGLEIAKKCDYVFYTSLMAGTTLGRIQRIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGIKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLAEKRMYMTANEAMELLLKVEDMKKGGFTDDTLVVVLARAGSLNPTIRAGYVKDLIR--EDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRV 262
10 -22.000d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  1................................................................................................................................................................................................................................................................................................................................................................MIWIVGSGTC-RGQTTERAKEIIERAEVIYGSRRAL--ELAGVVDDSRARILRSFKGDE----RRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDV--EIKIEPAISSVQVALARLKVDL-----SEVAVVDCHA-----DFDAELTELLKYRHLLILADSHFPLERL---------GKRRVVLLENLCMEGERIREGNADSIELE------SDYTIIFV........................ 191
11 -20.400d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  15  1.............................................................................................................................................................................................................................................................................................................................................................EAVTLLLVGWGYAP-GMQTLEALDAVRRADVVY-VESYTMPGSSWLYKSEARVVEASRRDLEERSREIVSRALDAV-VAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFY--FGGTVTLPGPWRGVTPISVARRIYLVDERGVQLSPGQGVSLLLEADREYARELARLPSVLVEAGAGGGHRVLYWSSLERLSTA--DVEGGVYSIVIPARLSGVEEWLLAAASGQ....... 262
12 -15.100d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  11  1..............................................................................................................................................................................................................................................................................................................................................................ETALYLLPVTLGDEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYTSPEDISGYLKPLAGGASMGVISAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ--RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLL......................... 231
FFAS is supported by the NIH grant R01-GM087218-01
9 5 5 2 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.