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60683563.1-142
Query: gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MSINELQDEVVAEFSDFDDWMDRYQLLIDLGNEQEPLDEKYKTEQNLIEGCQSRVWLQADEVDGKIIFKAESDALIVKGIIALLIKVVSGHTPDEILNSELYFIDKIGLKDHLSPTRSNGLLSMVKQMRMYALAFKAKEAKGLast
1 -73.800PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain  ali follow..  31  1.........LRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPALFDELGLRAQLSASRSQGLNALSEAIIAATK......... 126
2 -6.130PF11685.3; A7JME1_FRANO/8-281; Protein of unknown function (DUF3281 topsan)  ali follow..  19  43............KFELTDAEVSHYTNI--LGKNIERVESQTPLHDSDIKGCQDDN-CTANANPTAYNLPAGENKISVSGIVTI-----NGKSVDLAKDVKPDIIYTEAVVSHVFPTGA--LQALVDALNHPSNVDLPFSANG 193
3 -6.100PF08224.6; A2YHP3_ORYSI/98-331; Domain of unknown function (DUF1719 topsan)  ali follow..  11  26...DGSCRSAVRRFEWFADGANEFLRFVEFGGTPHQYLFFDPLIRQLLAGKTLEYKLVSENKYRLFVIRPFCISE--NRIEARLIFDSKNASALE--DFFLCMLLQVSESVDILGIVIKCLQLFNPHFMSTAESVRNELTQ. 160
4 -5.080PF09769.4; Q6BQ68_DEBHA/34-191; Apolipoprotein O  ali follow..  11  54....................................AVQGINSVQHYMNQGYTKYNETERQVTDTMAELHYKPEDLLPSTLYIVIATMSGN----IMARQRGLIAKTASFRYFLPQTFNNVSGFVWNLEK............ 151
5 -5.030PF00021.16; UPAR_RAT/216-295; u-PAR/Ly-6 domain  ali follow..  14  36......................................DVLGNRSYTVRGCATASWCQGSHVADSFQTHVNLSISCCNG............................................................... 76
6 -4.990PF00082.17; FUR2_DROME/412-706; Subtilase family  ali follow..  19  222...................................................................HTGTSASALAAGICALALEANPELTWRDMQYLVVYTSRPAGVKRKYSHKFGYGLMDAGAMVS............. 295
7 -4.780PF00722.16; Q6ES25_ORYSJ/25-208; Glycosyl hydrolases family 16  ali follow..  15  1............................................................FRDECDIPWEPQNARFTDDGNGLSLSLVSNYSGCMLRTKKQFIFGSVSTLIQLVPGNSAGTVTT.................. 64
8 -4.710PF03281.9; A7S6E3_NEMVE/102-428; Mab-21 protein  ali follow..  13  212ISFSKAEAALFNSMS------PPMMHCYRIFKTI--YYCELTLPKVLCSYYMKTIFLWVCERLPEDVWDESNLAQVVLGLLDELVHCLVTKSCPHY------FIPECNLLEHAHQDFLLDLARKVLEIRT............ 327
9 -4.710PF07272.6; Q84143_9REOV/1-146; Orthoreovirus P17 protein  ali follow..  16  16FSPTVLEECLTPSFTAITDSDPVRYFNIELPSTHRLLPW---LPALLSQSCSVHVSLTRRFSYSTLSDICEYDCKLLPSVNAIVLNPVLDLPSSIVIHWD-------GRINSTAAKRSRGIDTVID................ 132
10 -4.580PF11285.3; A2C756_PROM3/66-346; Protein of unknown function (DUF3086 topsan)  ali follow..  17  105.TFKPDESLIRECLEQFLSQPDFYADPWKLRRSLDPRDKELLED-----------WFFNQGGRGAQPSRNSRNILVAAALIAILGELYGDRFQSLVLAGEPERLGE-GLQDALGLARED....................... 215

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.