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Query: gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSINELQDEVVAEFSDFDDWMDRYQLLIDLGNEQEPLDEKYKTEQNLIEGCQSRVWLQADEVDGKIIFKAESDALIVKGIIALLIKVVSGHTPDEILNSELYFIDKIGLKDHLSPTRSNGLLSMVKQMRMYALAFKAKEAKGLast
1 -73.900PF02657.13; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain  ali follow..  40  1..........IENFSLLDDWEDRYRYVIELGKMLEPLPDALKNDQNKVSGCASQVWLATTICEPALMIRGDSDAHIVRGLVAILLALCSGKTGAEILKADPALFERLGLREHLTPQRSNGFKSMVGRIHA............ 126
2 -7.520PF15409.4; C5GMH2_AJEDR/215-302; Pleckstrin homology domain  ali follow..  12  5.........................................KRRRKRHQGYARR-FFSLNFTSSTLSYYHDRNSSALRGAIPLNLAVIATNQKTREISIDSG---------HLRASNDSDFLAWKRALEK............ 87
3 -7.460PF08224.9; Q8LHX1_ORYSJ/99-327; Domain of unknown function (DUF1719 topsan)  ali follow..  13  25...DEPIRSAVRRFEWFADGANDFLRSVEFGGTPRRYLFFDPLIGRLLAG--ETLEYKLVQGNNQHLFWIRPNNTAERGVEAKLIFVYNDESVPV--NFFLGMMLQLSECTNIVGTAIKCLQLFAPHFKSTTETVRKELSQ. 159
4 -5.360PF11285.6; D4ZW10_ARTPN/64-342; Protein of unknown function (DUF3086 topsan)  ali follow..  15  107.AFAEQTQQIRQIIDQYRSNPDYYGPPWQLRRTFEPIHAKQVSN-----------WFFNQGGRGALRTMGSQNILVASATVSILRSLYDRRLGTLVLANSPERLGE-GLQDCLGIDRRD....................... 217
5 -5.330PF05551.9; Q8X1S1_BEABA/120-236; Zinc-binding loop region of homing endonuclease  ali follow..  12  1...............................................IGWC---SSVLKPNKQIQVSFKGANKIALLHELVLWADGLQCNPIRNGQHISHLCANPRCMTLGHLEDAAIN....................... 75
6 -5.250PF00719.17; G8YAG9_PICSO/94-276; Inorganic pyrophosphatase  ali follow..  14  9.....................SNAKFEINAKLPGNPITQDVKDGKVRFVGAFPQTWEDPTTKDRELSLYGDNDPLDVCDILGSMALVDSGELDWKIIVINVDMAKELHDIHDVYVRCPGLLEATRQWFRFYKVPDGKPKNH. 158
7 -5.220PF08481.8; A8AZQ2_STRGC/488-579; GBS Bsp-like repeat  ali follow..  19  20..........................................VSPNGLNEVLVPTWSEVNGQDDLVWHKAVKQA---DGSYRATIKASDHKNSQGKYLSHVYYVTATGTKEFVTGTAT........................ 92
8 -5.200PF11008.6; G2J3R3_PSEUL/16-126; Protein of unknown function (DUF2846 topsan)  ali follow..  13  1...............................................FTGCASVPMGDPKADAQLKTFAAPPAD---KSGIYIYRNSFVGQALKKDLHLNGERLGETANKVYFYRQVAPGKQTVSTESEFSDNSLDLITNGG 92
9 -5.170PF14153.4; A8FC19_BACP2/4-204; Spore coat protein CotO  ali follow..  14  120...EPRRKRVKKPLSQMS--DEKVDFLTSLPHNMPRALCLIEADGKTYRG------IIMDRKED-----------------TVVIRTAGGGNPVELAIDDISSIHPLGF................................. 201
10 -4.930PF01049.15; F6RPA3_MACMU/534-681; Cadherin cytoplasmic region  ali follow..  17  116.SLTSSTSDQDQDYDYLNEWGSRFKKLADM................................................................................................................ 144

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.