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Query: gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKESMKAREIKRAKLVAKYAEKRAALKQIVRTGDPAEAFEAAQKLQELPKNSNPIRMHNRCKLTGRPKGYIRQFGVSRIQFREMASNGLIPGVKKASWLast
1 -33.700PF00253.19; RS14Z_BEUC1/11-60; Ribosomal protein S14p/S29e  ali follow..  46  1..............................................NSKPKF--GVRAYTRCNRCGRPRSVYRKFGLCRICLREMALAGQLPGVTKSS. 50
2 -7.010PF05128.10; Q15RI0_PSEA6/195-355; Domain of unknown function (DUF697 topsan)  ali follow..  13  10FEQQVITKVDQAALAKVMRNAGASSVMIAVSPFALVDMAIVLWRNIRMMQQVSE---------VYGVHLGYWGRIALIRQVFKNMLYAGAA........ 91
3 -6.930PF17068.3; RRG8_YEAST/8-273; Required for respiratory growth protein 8 mitochondrial  ali follow..  14  13.INKNCAQRVKDVSPLITKWSDKRKKLYFKDEEEMVGQFHLENFNLKNNL--ASPMR---AEKISKLCRELLIPLKVVP.................... 95
4 -6.480PF14963.4; H3DF96_TETNG/13-269; Calcium signal-modulating cyclophilin ligand  ali follow..  16  1..SAAQKRAEIRRRKLLMNSEERMNRIVGCTTNSSENHEPRFHLDLDRTEPVSSSS........................................... 54
5 -6.300PF01679.15; B0DPN2_LACBS/2-50; Proteolipid membrane potential modulator  ali follow..  28  13...................................................................PIGVFFITGCSCELLINILLTGFVPGAIHAFW 46
6 -6.040PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin  ali follow..  17  4....EAIGGDATVRALTRRFYEL------------MDTLPEAARCRAIHPADLSGSEAKFYDYLTGGPPVYVEKHGHPMLRRRHFVAP--IGPAERDEW 87
7 -5.640PF16958.3; G8ZTV2_TORDC/2-155; Pre-mRNA-splicing factor PRP9 N-terminus  ali follow..  68.NRKQFVLQQHEIDLFLQESMRKLRDLGSLKGPVNTHSLRDEEATFEIFKQNLEEIKDKYK...................................... 127
8 -5.560PF00967.15; HEVL_ARATH/73-191; Barwin family  ali follow..  14  73...................................................AAVTVRIVDQCSNGG--------LDLDVAMFNQIDTFGYQQGHLIVDY 114
9 -5.450PF02317.15; Q0C9A1_ASPTN/215-362; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain  ali follow..  47.VSRVIQRLDEERMAIARAYGFDVPSLLETLERDYKLGFTEFHQFARGSKIKGAPTNLQHRYVREDIAYVLVPWYELGL.................... 128
10 -5.440PF10743.7; J7TCK7_MORMO/4-87; Regulatory phage protein cox  ali follow..  17  17......................................................................FAEMIGKTKQAISDMRKDGKLPVVEMKD. 44

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.