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Query: gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range:1-388), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIIRTILDTDLYKFTTSYAYIKLFPYAIGTFSFKDRDGTEYSDEFVERLRTEISQLSHVALTEKELEYMIKNCRFLPRVYWEWLSSFRFQPEKIEIRLDENRQLHIEVNDYLYKATLYEVPLLAIVSEIKNQSSGNVANLEDILYKLSEKTELSNKHQLLFSEFGTRRRFSFDVQNQVIGHLKQTAHYCIGTSNCHFAMKYGMKPMGTHPHEWFMFHGAQFGYKHANYMALENWVNVYDGDLGIALSDTYTSAIFLSNLSRKQAKLFDGVRCDSGDEFRFIDQLTARYKELGIDPTTKTIVFSNALDFDKALDIQEYCQGKIRCSFGIGTNLTNDTGFKPSNIVMKLSQCKMNMNQEWRECVKLSDDIGKHIGSPEEVRACLYDLRLELast
1 -53.600PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family  ali follow..  20  2...............................................................................................................................................................LLLEFGARRAQGPDG--AISASKYCYLGGFDATSNVAAGKLFGIPLRGTHSHAFVSSFMSLDEIVDK--VLRSSDGKSTCKDF-ICLVQTCLTKCAVALALNELGYKAVGIRLDSGDLAYLSTEVRKFFCAIERD-GKMIVTASNDLNEETVDALNK--QGHEVDAFGIGTNLVTCYAQAALGCVFKLVEIN------NQPRIKLSEDVTKVSIPCKKRTYRLF..... 228
2 -5.100PF04539.11; P96032_SYNSP/175-251; Sigma-70 region 3  ali follow..  21  5......................................................................................................................................................................................................................................................................................KIKKTQRQLAQDLGRAATIAEIAEALELEPAQIREYFRVSRHPISLDVRVGDNLLEDSGESPDNNV............................................ 77
3 -4.680PF01527.15; O50654_BURGL/7-89; Transposase  ali follow..  19  4......................................................................................................................................................................RRRWTAEQKLAMVRESFE-----PGKSVSMVARQHGVNP--NQLFHWRKLYQD......................................................................................................................................................................... 49
4 -4.410PF03371.10; Q4UCH1_THEAN/6-177; PRP38 family  ali follow..  8  19ILRDKVYNSFYWKESCFGLTAESLIDKAVQIKYVNRQPSPFICLVLKQIQPEMEIVHEY-IKNEDYKYLRALGIYYAVEVYRTLEPFLADYRKLRFRNIDGSYVIKYM-DEFVDDCLTNSTYLDVD...................................................................................................................................................................................................................................................................... 156
5 -4.130PF08976.6; EFCB6_HUMAN/1209-1326; Domain of unknown function (DUF1880 topsan)  ali follow..  13  2..........................................................QILTDEQFDRLWNEMPVNAKKYPDFLSRFSSETAATPMATGDS............................................................................................................................................................................................................................................................................................... 47
6 -4.070PF05669.7; MED31_SCHPO/12-114; SOH1  ali follow..  12  6................................................FEIELEFVQMLS-NPWYLNFLAQHKYFEDEAFLQYLEYMEY-------------------REPEYVKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDE.............................................................................................................................................................................................................................................. 88
7 -4.040PF13688.1; ADMB_ASPFU/277-484; Metallo-peptidase family M84  ali follow..  10  1.........................................................................................KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTSTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMT................................................................................................................................................................. 169
8 -4.030PF06297.9; PRIC1_ANOGA/274-379; PET Domain  ali follow..  14  52........................................................................................................................................................................................................................................................................................GERHRVRQLLQQLPPHDNEVRYCHSLTDEERKELKLFSAQRKREALGRGT.......................................................... 101
9 -4.020PF01314.13; Q704C0_THETE/215-595; Aldehyde ferredoxin oxidoreductase, domains 2 & 3  ali follow..  10  130.........................................................................................................................TLGFAMEASERGLTKEFGYKKAARELAIDIALRRGFGDLLAE-GTMQRLGKGAEELAVQVKGLEVSGYDCHAAPAMALAYATSPIGP-HHKDAWVISWEVKTDRLGYTREKAAKVIELQRIRGGWFEAFVACRLPWDWYPKLFKAATGIDATPDYFNEVGDRIYALIRAFWIREYGYWSRELDVPP-------PKWFKRPLTKGPLKGAHLDYDKYNELLSHYYDLRG-----GQNGVPRRSTLKRLG................... 380
10 -3.980PF14434.1; E6UJ22_RUMA7/3-117; Immunity protein Imm6  ali follow..  10  36...RNYTADELYSLVT---------DDELLYNYTDNAAETECEAFSQAFISVLMCMICAKYHSEGQKFLPEDIEPIQGDFFTYLKEKR............................................................................................................................................................................................................................................................................................................ 115
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.