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Query: gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIIRTILDTDLYKFTTSYAYIKLFPYAIGTFSFKDRDGTEYSDEFVERLRTEISQLSHVALTEKELEYMIKNCRFLPRVYWEWLSSFRFQPEKIEIRLDENRQLHIEVNDYLYKATLYEVPLLAIVSEIKNQSSGNVANLEDILYKLSEKTELSNKHQLLFSEFGTRRRFSFDVQNQVIGHLKQTAHYCIGTSNCHFAMKYGMKPMGTHPHEWFMFHGAQFGYKHANYMALENWVNVYDGDLGIALSDTYTSAIFLSNLSRKQAKLFDGVRCDSGDEFRFIDQLTARYKELGIDPTTKTIVFSNALDFDKALDIQEYCQGKIRCSFGIGTNLTNDTGFKPSNIVMKLSQCKMNMNQEWRECVKLSDDIGKHIGSPEEVRACLYDLRLELast
1 -93.900PF04095.14; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family  ali follow..  40  1..............................................................................................................................................................FLISDFGTRRRYKLAWQEHVIRTLLEAAPIVRGTSNVFLAKKLGITPIGTMAHEFLQAFQALDRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLYFAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKDRFKTGFGIGTNLTNDMGHTPLNIVLKLVECN------GQSVAKLSDSPGKTMTNNSTFLAYLRQV... 223
2 -4.980PF13622.4; A0QVF9_MYCS2/25-265; Thioesterase-like superfamily  ali follow..  10  1...........................................................................................................VRGTWSAAIQHAAPASALLVRALEHCERAETRLARVAIDLMGGVPSEGDLWVRAEVQRPGKQIE------LVGAEMLATGPDGEPRTVARASGWRMLTLDTSTLQHTGVSPLRPLENARSHDMAKNWEPNYVHSIDWRWLTV---------------------PLAPGPGESWLRPTVDLVKGEAMTPLQRLFAVADDAN------------DIRKWTF-LNTDLVVHVHRIPEGEWIGIAETSYGPDGIGTTVGTLFDFSG................... 230
3 -4.950PF00286.18; CAPSD_PVXX3/50-188; Viral coat protein  ali follow..  12  4.............................................................................................................................................................................................VATNEDLSKIEAIWKDMKVPTDTMAQAAWDLADVGSSAQTEMIDTGPYSNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSP--------ANWQAQGFKPEHKFAAFDNGVTNPAAIM........................................................................... 126
4 -4.560PF03437.13; Y419_ARCFU/1-246; BtpA family  ali follow..  2......................................................................................................................EKTVIGVVHLLPLPGSPEHTDLSAVIDKAVKDARAIEEGGADALILEN---GDKPFLKEVGKETVAAMTVIACEVKRDVSIGLGINVLRNDAVAAL----AIAKAVNADFVRVNQLFFTSVSPEGILEGKAGEVMRYKKLVDCRAMIFADIAVKHAVHFASLADAVILTGKTTGGEVSLEEVLAGSGVNAENAARILKWCDGVI-----VGTYIKRGGLVDAERVRRIVRAAK..................................... 245
5 -4.530PF07104.9; Q56S84_9CAUD/1-124; Protein of unknown function (DUF1366 topsan)  ali follow..  5...........................................................................YESKSKEYDASGAASATKVILKNRDGAYVPVFLPVDKIDLS--NTDLLKEALEVIYQENFPQRAENEKFNDIDKKIAKYDEMIEKMQASIDKSEKMTQLATATLNSL.............................................................................................................................................................................................................. 109
6 -4.500PF15151.4; F7DMA6_MONDO/1-142; Response gene to complement 32 protein family  ali follow..  11  31....................................................................................................................................................DLSDVLCEFDEVMADFSSPFHERHFEYEEHLKRMKRRSSASVSDSSSGFSDSESADS--PYRHSFSCSDEKLNSPTVSTPSLSSPLVVPRKAKLG----DTKELEDFIADLDRTLESM.......................................................................................................................... 142
7 -4.480PF14701.4; C8VTT8_EMENI/134-575; Glycogen debranching enzyme, glucanotransferase domain  ali follow..  11  88..LLSLADVVWNHTANNSKWLEEHPELEAALELDTALLKFSHELQKRGLPTDFKTVDDLTLVMNEVEFYVLDVKSNARRVIDEWKVSTNSDIERGRWAQLDLGAYKAWSLEDQASLIRQK-GVAIATALFGNFDATSSDLTAVENTLRKLLDVVNVPFYKEYNSDVTEIMSQLFNRIKYLRIDDHGPKFTRLPLNEITKKHSPKALALANNGWIWNADAMRDNAGPNSRAVIVWGDCVKLRYGDGPEDNPFLWDFMARYTRLMAKYFSGFRIDNSTPLVVAEYLIDEARKIRPD.............................................................................................. 440
8 -4.460PF03537.11; V2X157_MONRO/32-264; Glycoside-hydrolase family GH114  ali follow..  14  30..............................................................................................................................................................................................GKYNICYVNAFQTQPGEESLWQTPQRDHLLLRNRNGDYFIDPDWPDEFLLDTSTDAKRSEIAAIVNGWITECQSKGFNAIEPDNLD---------------TFTRSSGLLTMAGNLAYAKLLADHAHSLG-----LAFGQKNTGSELGSRGKTQVGFDFALAEECQVFDECDAYTDVYGGNV................ 191
9 -4.330PF09859.7; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA  ali follow..  14  2.............................EYRYFRYPLPDLLGGLRSALYPRL-----GEVANRWNERMAIPLRY-PATHADFLDQ-RPTPLLLQYVPGDFNCLHQDLYGD----LAFPLQVAILLSEPGKDFTGGEFALTEQRPRMQSRVEVVPLRQGDAVAFAVHNRPVQGTKGNYRVNLRH------GVSRLRSGMRHTV---GIIFHD................................................................................................................................................................................ 171
10 -4.290PF07979.9; Q8KRK8_ECOLX/838-938; Intimin C-type lectin domain  ali follow..  10  2...............................................................................................................................................................................KKIVSVNSDSRVNYNSASSICGKINGSLPSSIAELETLYNKWGAANNYQHYTQASITAWTLQTSDDVGVTSTDLVRKNPQLNKVNINDNNAYA........................................................................................................................ 97

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.