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60682477.24-588
Query: gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CYSTPDGVMSSLSQAEKIMESRPDSAMAILQHIPTPETLHGKAQADYSLLMTQAMDKNYINFTSDSLIKFAVGYYGGHTEDLVAKGKSFYYYGRVMESLDKVEDAMTFYLKAKDVLQSSDQFKLLGLVTEKIGDLNRRQKLLDAALNDYKESFDFYASIPDSLCMLYAYRNLGRGFLYKNQIDSAYYYYDKALYILNLKKYSAVGSILLELGVIHRSEKDYVGAEQYFLSFIEKEKDPEKLFSGYLALGNLYLYMDRLKDAERYLLLCLGSSNLVIKRDACECLYDLEKELNNFKGAIGYKDIADSLRIITQDIDIQNSIATLQSRYNSEKWQRESLQSSIEKKNILLISSFVSFIAIMVIIYIYYKYRTNQKLVKDINERIRKNDADIKMYQRQILNYQDLQRETLQDYRNQIGELHGKMSVLEDQNKALSLRLTEKKHDIPESEADDLYAIYMQALHILIMLRGKNIENTSGKKLLLDADWDKLFHLSNAIHGDFITRIKNDFPTLTKHDIEICCLLRFGIEHEVLGSIFLTETDSVTKAKRRMKKRLNLSASDDLDVFLLKYLast
1 -27.200PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat  ali follow..  10  6....GLTEEGILRASALTFGTDVKGAYAILDRG----QIIPASATAYWQSFDDLAWSLQDMQAVELASRKLLESGKAREEDYQRLILLG--------RDNDPKAAYRLSMDGWQRFRRSD----FLKSALELGIAMKDYRTTADMLTRQEREGNLKPQEQD----AYFWSLVSQVHRGTGATGESIRCYREALRR-----APTDSELAAEYVWLLLDLDRREELRELLIAWKGRENTMPS---LYEPFGAALAYLGEYHKALPYFQARYSQKR--SDPAWLAAYADTMEQAGWVEAAFLERLNALALSRR............................................................................................................................................................................................................................................................... 283
2 -24.000PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1  ali follow..  11  16...EAGHPEKALEELAKKEGKIVDEAEEIYRKL----VVNPDNYHYYEGLQKCLGLISDGKAYTSEQVEKLVKLYDD---EKYPRSAAAKRIPLDFLEEDAFKAAVSLYVRPFSLFTDLRPLYSNPRKVEIMEEVFLEVSQSLQSTKTFSGSSD----IEAPSTYLWTLYLLAQHFDKRRQYEKAHSYINLAIEH-----TPTVIDLYLVKGRILKHAGDPVAAAALADEARSMDLADRF---LNSECVKRMLQADQVELAEKTAVLFTKDGDQHNNLFYELASGDSHFRQGNLGKALKKYLSVEKHYNDMVEDQFD-------HTYCLRKMTLRAYIRMLRFQDHLHSHRFFFRAATSAIRCYIKLHDSPPKAAAEQHEAAVAGLPATERKKMRQKLRKAEAKAKKEAEEKAKEEEIAAAAAASKGGKKGTQTSRP-----------------------------------------VDTD----------------DKLMNVEDPLSEALKYLRLLQEHSADALETHLL------EVYFRTNKVKKQ................ 519
3 -22.400PF10602.4; RPN7_SCHPO/77-250; 26S proteasome subunit RPN7  ali follow..  11  5..............................................................................................LNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVY---ADMRVVGQLLEKLKPLIEKGGDERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPYYDVVRYAVISGAISLDRV................................................................................................................................................................................................................................................................................................................ 169
4 -21.700PF12688.2; A5CSW9_CLAM3/39-160; Tetratrico peptide repeat  ali follow..  10  1.....................................................................................ARVLYEVGGAYDTAGEEATALDLYERAEAAGLAGHIL---RRCYLQHGSTLRNLGRVDESLALFTRAQAEFPGSSS------LAVFEALTLHAAGRPDAALASVLRVVADHVPDDE----------------LQRYLPAIRGNAAYL............................................................................................................................................................................................................................................................................................................................................. 122
5 -21.400PF04733.9; COPE2_ARATH/7-293; Coatomer epsilon subunit  ali follow..  18.......................QTAINNSEIA----NLSPENAVERDCLVFRSYIALGS-------YQLVISEIDESAATP---LQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNN----DTLRLIAGIIFMHEEDYNETLKHTHAGGTM-----------DLYALNVQIFIKMHRAEYAEKQLRVMQQI---DEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMT---CLILNGKAVCCMQMGNFDEAETLLLEALNKDA--KDPETLANLVVCSLHVG--KSSSRHLSQLKLSHPE---SSAEDNFERAVQLVA............................................................................................................................................................................................................................................. 287
6 -21.100PF12862.2; B0X7J4_CULQU/253-348; Anaphase-promoting complex subunit 5  ali follow..  12  1........................................................................................YFLSYLNSVRVRDFFNATDALHRSFDRSTLHSMTMEYQYSALNLAILHAQFNHNEEALASIKECIMLAQENSDKICLQLAHAWLCLLD..................................................................................................................................................................................................................................................................................................................................................................................................... 88
7 -20.500PF13281.1; C3XTE7_BRAFL/42-425; Domain of unknown function (DUF4071 topsan)  ali follow..  96.............................WVRVLFLHVGRCQHSRAPSDLLLNQLRKARSKHQGHALAKELATLRGRLDDPTLLSGDIVHNFLLSYRECQDYNAMVKLYEDLQAI--PYLNITDCPSIQHLYAFALNRRNRPGDREKALDIITQAIEN--SDVPAPDLLCMCGRIYKDLEARENAIHWYRKGFEVQPNTYA-------INLATLLVVSGQDFLKSPELQRVGVILNPSLEDYWDVATFFEISALAQDYSKAIQAAEQMYKLKPTWYLKSTLANIKLQDRFRKDKKMS............................................................................................................................................................................................................................................................................ 372
8 -20.500PF12968.2; Q8KAL8_CHLTE/2-145; Domain of Unknown Function (DUF3856 topsan)  ali follow..  5...................................................................................EVVGAYLALSDRQLVAGEYDEAAANCRRAMEISHTMPPEEAFAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE........................................................................................................................................................................................................................................................................................................................................................................... 136
9 -18.800PF13424.1; Q4DK03_TRYCR/685-760; Tetratricopeptide repeat  ali follow..  13  3....................................................................................HQRPLQNYAQLKCQLGDMLSALSLQETELEIAKEFGDTRATSRCMGAIALTKRFLGRYDEAAENYMEELSVYNA....................................................................................................................................................................................................................................................................................................................................................................................................................... 76
10 -18.500PF06552.7; TO203_ARATH/7-193; Plant specific mitochondrial import receptor subunit TOM20  ali follow..  1...............................................................................................FDRILLFEQIRQDAENTYKSNPLDAD------NLTRWGGVLLELSQFQEAITKFEEALLIDPKKDE------AVWCIGNAYTSFAFFDLATQFFQQAVDLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDA---KYDAMGWVILAIGVVAWI................................................................................................................................................................................................................................................................................................................ 183
11 -18.300PF09295.5; Q6CDA2_YARLI/40-455; ChAPs (Chs5p-Arf1p-binding proteins)  ali follow..  10  200...........................................................................................FMAFMRITRLYDRGLEIVRRLQTEYPE---------VVSLIARIQLLMDEEVEAVKTMVKGLEENGRDAD------LLSLQAEFLLSKNREDMALGCATRAVNSAPSE-----SKLWTELVQVYIRQKDWENALLTLNSCPMFTYHEHDQHRMPAPAKSHYPLPLDGILKDVYEASQVDQTEEHAQIDPKLLKLPAPNLRATFAKVYEHLTAIVHEIGWDQLLEVRSRVFVMDEEYK............................................................................................................................................................................................................................................. 416
12 -17.600PF10300.4; TT39C_MOUSE/31-495; Protein of unknown function (DUF3808 topsan)  ali follow..  198.....SMVPPNLLKIINLLPGDRLQGLSSLTYASESKDM-KAPLATLALLWYHTVVRPFFASDNKGGLDEAKAILLRKESAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQRE--IQHVCLYEIGWCSMIELNFKDAFDSFERLKNE-----SRWSQCYYAYLTAVCQGATGDVDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVL------------YLWKALPNCSFPNLQRMSQACHEVDDSSV.................................................................................................................................................................................................................................................................................................... 450
13 -17.500PF10952.3; Q6LP27_PHOPR/6-147; Protein of unknown function (DUF2753 topsan)  ali follow..  10  2......................................................................................ETHTLLATEAEKSNKPMMSIIHYQLALAESQLLEPITIKVVSCHNLADFWRKNGDNDYELKYLQLASEQVMLL-PRKECDAFIETLGCCRSALIEFLKRHPNPVIAKQLSHISSSN........................................................................................................................................................................................................................................................................................................................................................................... 131
14 -17.000PF09311.6; KLC4_BOVIN/79-249; Rabaptin-like protein  ali follow..  6...........................................................................................EAQVMLALANHLSTVESEKQKLRAQVRR--RDELAGTQQRLQRSEQAVAQLEEEKKHLEFLGQLRQYDGHAAEEKEGDASKDSLDDLFPNEEEEDPSNGLSRGQGAQHEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLER........................................................................................................................................................................................................................................................................................................................................ 162
15 -16.900PF03377.8; Q5H3H9_XANOR/115-499; Xanthomonas avirulence protein, Avr/PthA  ali follow..  10  78...SNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNNGGKQALETVQRLLPVLCQDHGLTPDQVVKQALETVQRLLPVLCQDHGLTPAQVVAIASHIGGKQALETVQRLLPVLCQD-----HGLTLDQVVAIASNDG-SKQALETVQRLLPVLCQD------HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQD-----HGLTPNQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP---DQVVAIASHDGGKQALETVQRLLPVLC--QNHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN................................................................................................................................................................................................................................................ 385
16 -16.600PF10579.4; Q6GL21_XENTR/1-80; Rapsyn N-terminal myristoylation and linker region  ali follow..  14  3..................................................................................QDQTKQQIQKGLRMYQSNQTEKALEIWAKVLEKTTDSAG---RFRVLGCLITAHSEMGRYKDMLKFAVIQIDTARELEDPD.................................................................................................................................................................................................................................................................................................................................................................................................................. 80
17 -15.400PF10345.4; Q6CDL4_YARLI/63-642; Cohesin loading factor  ali follow..  310.HTTLKYGRELLKDCLKLLDRDQEDI---ISHISDNTAQKLALRCNVHLYIALVNFSGLAYKKGHRSFERFVTLSKGLPEEASDDLYSCLVAALSSQTSGKWKKALKYYKRIESDDP------LYPAALANICCINPSTANMDTLKQLINEMSPEHHGLKHAMFEVIR----LVHDTSNMSSLDRQESMKKAQKALHLGMTQQLSYATTLACVDMF--GSTAEKNLELGNAFRTALSESDAYVIGEKKKGYLHQLGQEEKLEQLNTSVANIGK.................................................................................................................................................................................................................................................................................................... 580
18 -15.100PF04184.7; ST7_AOTNA/16-571; ST7 protein  ali follow..  27...........LKINDNL-----STVSMFLNTLTPK---------FYVALTG-----------TSSLISGLI-YFRKYGTEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSE------CKVWRNPLNLFRGAETGREPLTYYDMNLSAQDHQT-DSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEEEEATTIAEAEKLFKQALKAGDGTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAAS----------------------------------RRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLP-------------SFHEVSVYPKKELPFFILFTAGLCSFAMLALLTHQFPELMGVFAKAMID----WNCKSIFMRVED........ 555
19 -14.600PF12753.2; ETT1_DEBHA/1-442; Nuclear pore complex subunit Nro1  ali follow..  10  117.......YALALADLALFHSTDVNKVKEFFDAALERVDLG---------LQSHTGSIELLFTKSRILINQIPLQYISQLTESKVQDGVPKIDEKLDAALKIYEEAENQAKALKQYELFNEDNLEILQAFDDLLEIVDNFGKDNSEGDESDKEDDGDYEEEIQLSKKHPLYGIRNTDKYNEWWRDHTIQFLQNVDQQLEKSYKQENETENALLPLRREICKLQEAEIPSTVFTTLKYDEGFADVDQLEGLTRDESQKIFKTALDYLKMAEDKEEPES-AESMISLGNLYELDS--EEQENYYTEAEKILTKANNATNGKYEDILEN................................................................................................................................................................................................................................................ 440
20 -14.000PF11207.3; A6D938_9VIBR/15-220; Protein of unknown function (DUF2989 topsan)  ali follow..  5CFETRKN-------TDQLCESEPS-----CSSLNINDGQCRIART--DLIWHRYKMLDDPSEKNQVKDYHLLKEYRK----CLELASQIQPIEQADLKTKRFNALMYSIEEQERITRDLASST-----SPETLYFLWSETGSQAAKRRFLAMEN-----TGVLDTSSMQYALATYYI-SRDKQKTYQLLNRSLELSAG-GKYVNKEVIKSLASVTQNLDLPKQS..................................................................................................................................................................................................................................................................................................................................................... 200
21 -13.200PF04910.9; O80734_ARATH/225-566; Transcriptional repressor TCF25  ali follow..  1.........................................................................YFRYTHSSSYEQAQRAFQAAQAIHDLNGVASVLIHNPYHIE-------------SLITMADYFKFVGENDMAADSIGKCLYGLERA-ENKLFFKTLFTHMRNMDRRGCHRSALEVCKLLLSL----DTSNPVGALFCVDYFALRAEEYAWLEQFSEEYRNDNSLWLFPNFSY-SLAIARVYLEKMEPTSSSEATPRDTSKQSSLDLMTQAL......................................................................................................................................................................................................................................................................................... 211
22 -13.100PF13525.1; A6D3Q4_9VIBR/26-235; Outer membrane lipoprotein  ali follow..  5.....................................................................................PSQLYAEAQESLQGGNWTSAIERLEALDSRYPFGAYTE---QVQLDLIYAYYKNDDLALGLATIERFSRLN---PTHERSDWVLYMRGLTHMAQDRVKAAFADFDRLLKRYPNSAKNRLAKYDLATADFYIRREAWIAAINRAQEIQKTYPDTEAARQSLVLQKKAYEELGMQEQVERTEK........................................................................................................................................................................................................................................................................................................... 209
23 -12.500PF08631.5; Q2GVC9_CHAGB/710-978; Meiosis protein SPO22/ZIP4 like  ali follow..  12  5...............................................................VEDRLDVAEHMYAKTPEYTERLADVLYEIGKSLAARSDFPIAVKWFQRANDVINSQE-VELRLAILQGLVTALLGT----GTPEGLDKAKSYVEFIEAENKFVISLLKLELLTKTPAEVFDSDAYGDVLRHIIRNFNDGWIEKAVVTRMWMITNQRDSVETINTVQGVLKCLTNPLSAEAALLKKLELSYSQGQYDLAESWCQLSLHA...................................................................................................................................................................................................................................................................................................... 266
24 -11.400PF12895.2; A5DQ17_PICGU/77-157; Anaphase-promoting complex, cyclosome, subunit 3  ali follow..  14  1.................................................................................................................................................................................MQHQYQTAAFVGDKVLSLTHDAND------AFWLAQVYYNSGQYLRAKELISGKPEYEKS----VTCRYLAARSAIKLELWDEALDLVGEN......................................................................................................................................................................................................................................................................................................... 81
25 -10.900PF08424.5; Q0V1B0_PHANO/217-528; NRDE-2, necessary for RNA interference  ali follow..  1.......LTKKNTELVRKTREHPEDIQPWLDFIEHQEVMIAPERSLGEVDEARQRQLADVRI---PIYEEALKKVKNAQNDHIQLYRGLL---KEAQKSWTESKLWNRWTEVLKVHTESPE---LWLMYLDFVQSHLARFKYEACRKTFLECLDALQGSKEVESVLHIFVRMTSMIHGAGYQELALAIWQSVLER.................................................................................................................................................................................................................................................................................................................................................................................. 181
26 -10.200PF13512.1; Q1ZN67_PHOAS/21-165; Tetratricopeptide repeat  ali follow..  1............................................................................KEEVIPDVPPSNLYATAQTALQKGNWTSAIEQLEALDSRYPFGA---YSDQVQLDLIYAYYKSDDLALGEATIERFLRLN---PDNPQADWVVYMRGLTHMAQDR---------------------SFMHDMFNINRFDRDPTPSRQAFKDFKYLLERYPESEYGADAKARM............................................................................................................................................................................................................................................................................................................................. 145
27 -10.100PF00196.14; DEGU_BACSU/163-220; Bacterial regulatory proteins, luxR family  ali follow..  16  4...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQ........ 53
28 -10.000PF09613.5; Q58S54_9XANT/49-198; Bacterial type III secretion protein (HrpB1_HrpK)  ali follow..  1............................................................................................................................................................EKIQCPGSVVSGLIELITVGLTHEKIQDAAAVLAAVRILRPEL-----KALDTFDAWISIKRGNYVDGARLLRELEGDAGSKP---LCRALYACCLFAMGD-PSWHGVADGLIEEDA---DAEAVALVKALSGRTTPMSAPADVPVESSAPMEV............................................................................................................................................................................................................................................................... 142
29 -9.790PF11932.3; A6D8W9_9VIBR/4-255; Protein of unknown function (DUF3450 topsan)  ali follow..  3..............................................................................................................................................................................................................................................................................................................................................................LRLTLCSLPLLSVSSFATANDLNSARNVEAQTITQSAQSQARINKSSDKAFELKSDIAMLEQEVANLEVYEKHLQAVVANQEEEMASIDTQLEQISATRQKQDKPIRIDTRLARLDELKALMPQADVSDAEKYRRILEAYQIE--DYGIKLGSYRGLIHVGNDIEAEQLYLG----RLSLVARSLDRN-SALAPQIDKAFAIAHKQASPSLVE.. 242
30 -9.690PF08626.6; TR120_SCHPO/1-1173; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit  ali follow..  170.......TAELLEGFSSLEFS--HARSVILSPITDMPHLAPLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKGRIENQFGQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVCLVIMAHLHVDVQIPPNILSMFPSYNDRLNAFGPLKFDALLNFITEMRNVVDQLYQKSTLQPNDA-SESILRYAHLLTVVYSCKGFNDNALDHIIAQAPIRPVKKATT-------YVPNKATICQWIMRAQGQHLNSLSIRERCRIYGAMANMLGSIGSRLRVKMLRELVASLTPVLLETRRQNASKNGIHPEVIASHTAQSFKSTHYCNILPLISEICSNLQFDVLNELISLCDSLSDYRSILLLISLFFLTSVQTASSSQQISMFKAFRKTYLFASNAGIHINAPYWDPFMITDLKFIGSSENAELIHQRLRNGLPKSIEKGPFIYNPFNRRQDQNQSKSVLVVDEQVAFSIYFRNPLS-----------SVEVQDVH---LETKGVSAKCSHSTFTMRPLSIERTTLTVTPT................ 718
31 -9.590PF13371.1; Q1LJ97_RALME/200-272; Tetratricopeptide repeat  ali follow..  12  1...........................................................................................LKAIYLQESRWQRLLAVQNRLVILLPDSIE------EVRDRGLAYANLECFRPALEDLEAYVQARPDAADS................................................................................................................................................................................................................................................................................................................................................................................................................... 65
32 -9.250PF02001.11; Y1178_METTH/1-95; Protein of unknown function DUF134 topsan  ali follow..  11  32...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ITLDEFEAIRLRDYDIKQKKAAEIMGISQPTFHRTLTSARGKIA.............. 76
33 -9.130PF13432.1; A1W4G5_ACISJ/454-519; Tetratricopeptide repeat  ali follow..  11  1.........................................................................................YDQAMLAEKAGRLDDMERLLRAIIARQPDYHH------ALNALGFSLAERGRLEEAKALIVKALEF.......................................................................................................................................................................................................................................................................................................................................................................................................................... 61
34 -9.080PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)  ali follow..  36................................................................................................................................................................................................................................................................................................................................................................YILFSCILLYIVIQRLSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGG..................................................................................... 163
35 -9.080PF07638.6; Q7UFE5_RHOBA/9-192; ECF sigma factor  ali follow..  125.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDDGLERLFKVDPDSAKLVELRVFGLSITEAGELMKMSRSTAYRNRTWFAVHWD.............. 183
36 -9.020PF01418.12; RPIR_ECOLI/14-90; Helix-turn-helix domain, rpiR family  ali follow..  11  2...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GLAPYLRMKQEGMTENESRIVEWLLCAPAIKDVAEALAVSEAMI----VKVSKLLGFSGFRNLRSALED. 72
37 -9.010PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component  ali follow..  447......................................................................................................................................................................................................................................................IQGFWIISDLFLGTSMICITCDFECIARPLLTTIRPPSPPLLCSQIDKSSTEILPHVLADVKGPFEIHIRGILRRNSANPLLLNSSSKDSSPPPEECLQLLS--------------------RATQVFREEYLLKQDLAKEEIQRRVKLLIAQKEKQLEDVRYCREERKSLTETAEHLAEKFEEAKERQEDLINRLKR--ILRSFHTQLPVLSESERDMKKELQATTEQLQHLGNCINQVKRKMSYQEKQMEKGKSPRKSSLTLSDYQK----------KNIKTVLKEHGEHIQEMVKQIRNHVNF............. 723

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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.