current user: public
anford Burnham Prebys Medical Discovery Institute

Query: gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .
# Score Template Links and tools%idFirst MKYFRFVCEIKAKSSEDVNKSRDCINEVGIYCAYLSRMYEYYFPATQTDNVVSITVCLIDNLQKTKYPTSCDMKVVSNVVNIDKFNQLTPKDKSFYIIDLCQQAIMSLVYEMQWNTEVFEHTYDKIISMGGLFREYWRKAKSSPNKQLKAQIYFEDDYEKDGIYIDFTDKRGKLIKRVQFAPKGYQIYCKGISELQWQDNSHVIIKRAFGHGFTKTSDYWMIGVDGSIEYHSPRVENTEINTHGLFDLGILYWEGKTIMQNPNKGLELIKKAADLNNKHAQKWLERNMKQRTDSEQKNDLast
1 -22.500PF08238.10; Q74B15_GEOSL/119-154; Sel1 repeat  ali follow..  16  1.................................................................................................................................................................................................................................................AEAQYAYGMVLLSGDGVPVDKVRAIEWLGKASRQGN...................... 36
2 -11.900PF17139.2; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)  ali follow..  10  7......................................................................................................................................................................................................................VAYAFRYKNLDSSCHAASRAYREVSLYAEASNNLGFCAFM----RMDFEQAEKFHMDVYNLELLIADIGLMKIYQRTALNKEFYD 96
3 -9.630PF06552.10; TO203_ARATH/7-193; Plant specific mitochondrial import receptor subunit TOM20  ali follow..  17  51...............................................................................................................................................................................................................................IQEAITKFEEALLIDPKKDEAVWCIGNAYTS-TEAKHNFDLATQFFQQAVDEDNTHYLKSLEMTAKA......... 126
4 -9.270PF13432.4; A1AQL4_PELPD/29-93; Tetratricopeptide repeat  ali follow..  12  12..............................................................................................................................................................................................................................LVDDALHTARRGVEKFPAYVAGQRSLALACYA----KGLMDESRQALEAVVAAVPEDA................... 65
5 -8.850PF12862.5; APC5_SCHPO/263-353; Anaphase-promoting complex subunit 5  ali follow..  13  13..............................................................................................................................................................................................................................DYQQSVENLCRYFDHKVSYQYALLNLAMLQAD-----GCNEEALHAIEDTINACLNFALAWMFEFKRS......... 90
6 -8.540PF10579.7; Q8QGW4_DANRE/1-80; Rapsyn N-terminal myristoylation and linker region  ali follow..  11  2.............................................................................................................................................................................................................................................GQDQTKQQIEKGLKLYQ----SNDTEKALYVWMKVLRKGKFRVLGCLITAHSE......... 55
7 -8.530PF09613.8; F5XVY8_RAMTT/1-126; Bacterial type III secretion protein (HrpB1_HrpK)  ali follow..  6  26..............................................................................................................................................................................................................................EDAQTLVVLRAIRRLRPHAPTLAVVEAQQLVE----NGDLQGARLLLEEADACGTPVVKAMFALVLQQ......... 91
8 -8.520PF13424.4; Q4DK03_TRYCC/687-760; Tetratricopeptide repeat  ali follow..  8  1................................................................................................................................................................................................................................................HQRPLQNYAQLKCQ-----GDMLSALSLQETELERATSRCMGAIALTKRF......... 54
9 -8.380PF11207.6; F7YLW7_VIBA7/16-218; Protein of unknown function (DUF2989 topsan)  ali follow..  17  119..........................................................................................................................................................................................................................WSQIGDKSAQRKFLQREGKPELDAEMQYALATFYVQR-----DREKAIYLLHRTLELSNLDAIKSLASTNQILKQKEK... 197
10 -8.260PF10373.7; C0NR07_AJECG/209-489; Est1 DNA/RNA binding domain  ali follow..  12  1..................................................................................................................................................................................................................................AIRYYKLADTLNPDSGMSHNQLAVIGLA----DGNHLQATYHLYRAAREPYPTSNGNLEIEFRKVLAACAKGE 71
FFAS is supported by the NIH grant R01-GM087218-01
9 5 7 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;