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60681247.1-299
Query: gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKYFRFVCEIKAKSSEDVNKSRDCINEVGIYCAYLSRMYEYYFPATQTDNVVSITVCLIDNLQKTKYPTSCDMKVVSNVVNIDKFNQLTPKDKSFYIIDLCQQAIMSLVYEMQWNTEVFEHTYDKIISMGGLFREYWRKAKSSPNKQLKAQIYFEDDYEKDGIYIDFTDKRGKLIKRVQFAPKGYQIYCKGISELQWQDNSHVIIKRAFGHGFTKTSDYWMIGVDGSIEYHSPRVENTEINTHGLFDLGILYWEGKTIMQNPNKGLELIKKAADLNNKHAQKWLERNMKQRTDSEQKNDLast
1 -22.200PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat  ali follow..  22  2..................................................................................................................................................................................................................................................DALINLGEIYYSGTQVPLDYARAFEFFERAAKMGK...................... 36
2 -9.390PF10373.4; C0NR07_AJECG/209-489; Est1 DNA/RNA binding domain  ali follow..  12  1..................................................................................................................................................................................................................................AIRYYKLADTLNPDSGMSHNQLAVIGLA----DGNHLQATYHLYRAAREPYPTSNGNLEIEFRKVLAACAKGE 71
3 -8.850PF11207.3; A6D938_9VIBR/15-220; Protein of unknown function (DUF2989 topsan)  ali follow..  11  125..............................................................................................................................................................................................................................SQAAKRRFLAMENTGVLDTSSMQYALATYYISR-----DKQKTYQLLNRSLE--NKEVIKSLASVTQNLDLPKQSY. 201
4 -8.820PF13424.1; Q4DK03_TRYCR/685-760; Tetratricopeptide repeat  ali follow..  6  1..............................................................................................................................................................................................................................................HRHQRPLQNYAQLKCQ------DMLSALSLQETELERATSRCMGAIALTKRFLGRYDEAAE 65
5 -7.850PF06552.7; TO203_ARATH/7-193; Plant specific mitochondrial import receptor subunit TOM20  ali follow..  15  48............................................................................................................................................................................................................................KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-TEAKHNFDLATQFFQQAVQPDNTHYLKSLEMTAKA......... 126
6 -7.680PF10745.4; A4T7A7_MYCGI/6-82; Protein of unknown function (DUF2530 topsan)  ali follow..  19  27...............................................................................................................................................................................................................................VAALLAFTVDGLHDWRPITVAGLGVGVL---GTSI-------FLWQRHSARRGHRGAQRGL............... 77
7 -7.520PF10579.4; Q6GL21_XENTR/1-80; Rapsyn N-terminal myristoylation and linker region  ali follow..  11  2.............................................................................................................................................................................................................................................GQDQTKQQIQKGLRMYQ----SNQTEKALEIWAKVLEAGRFRVLGCLITAHSEMGRYKDMLK 64
8 -7.460PF12862.2; B0X7J4_CULQU/253-348; Anaphase-promoting complex subunit 5  ali follow..  14  13..............................................................................................................................................................................................................................DFFNATDALHRSFDMTMEYQYSALNLAILHAQ------HNEEALASIKECIMICLQLAHAWLCLLDSS......... 90
9 -7.440PF12688.2; A5CSW9_CLAM3/39-160; Tetratrico peptide repeat  ali follow..  12  1.................................................................................................................................................................................................................................................ARVLYEVGGAYDTGE-----EATALDLYERAEAAGLRRCYLQHGSTLRNLGRVDESLA 59
10 -7.280PF13432.1; A1W4G5_ACISJ/454-519; Tetratricopeptide repeat  ali follow..  20  12..............................................................................................................................................................................................................................RLDDMERLLRAIIARQPDYHHALNALGFSLAE---RGVRLEEAKALIVKALE......................... 60
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.