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current user: public |
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Query: gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299), from B.fragilis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . | |||||||
# | Score | Template | Links and tools | %id | First | MKYFRFVCEIKAKSSEDVNKSRDCINEVGIYCAYLSRMYEYYFPATQTDNVVSITVCLIDNLQKTKYPTSCDMKVVSNVVNIDKFNQLTPKDKSFYIIDLCQQAIMSLVYEMQWNTEVFEHTYDKIISMGGLFREYWRKAKSSPNKQLKAQIYFEDDYEKDGIYIDFTDKRGKLIKRVQFAPKGYQIYCKGISELQWQDNSHVIIKRAFGHGFTKTSDYWMIGVDGSIEYHSPRVENTEINTHGLFDLGILYWEGKTIMQNPNKGLELIKKAADLNNKHAQKWLERNMKQRTDSEQKND | Last |
1 | -22.500 | PF08238.10; Q74B15_GEOSL/119-154; Sel1 repeat | ali follow.. | 16 | 1 | .................................................................................................................................................................................................................................................AEAQYAYGMVLLSGDGVPVDKVRAIEWLGKASRQGN...................... | 36 |
2 | -11.900 | PF17139.2; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan) | ali follow.. | 10 | 7 | ......................................................................................................................................................................................................................VAYAFRYKNLDSSCHAASRAYREVSLYAEASNNLGFCAFM----RMDFEQAEKFHMDVYNLELLIADIGLMKIYQRTALNKEFYD | 96 |
3 | -9.630 | PF06552.10; TO203_ARATH/7-193; Plant specific mitochondrial import receptor subunit TOM20 | ali follow.. | 17 | 51 | ...............................................................................................................................................................................................................................IQEAITKFEEALLIDPKKDEAVWCIGNAYTS-TEAKHNFDLATQFFQQAVDEDNTHYLKSLEMTAKA......... | 126 |
4 | -9.270 | PF13432.4; A1AQL4_PELPD/29-93; Tetratricopeptide repeat | ali follow.. | 12 | 12 | ..............................................................................................................................................................................................................................LVDDALHTARRGVEKFPAYVAGQRSLALACYA----KGLMDESRQALEAVVAAVPEDA................... | 65 |
5 | -8.850 | PF12862.5; APC5_SCHPO/263-353; Anaphase-promoting complex subunit 5 | ali follow.. | 13 | 13 | ..............................................................................................................................................................................................................................DYQQSVENLCRYFDHKVSYQYALLNLAMLQAD-----GCNEEALHAIEDTINACLNFALAWMFEFKRS......... | 90 |
6 | -8.540 | PF10579.7; Q8QGW4_DANRE/1-80; Rapsyn N-terminal myristoylation and linker region | ali follow.. | 11 | 2 | .............................................................................................................................................................................................................................................GQDQTKQQIEKGLKLYQ----SNDTEKALYVWMKVLRKGKFRVLGCLITAHSE......... | 55 |
7 | -8.530 | PF09613.8; F5XVY8_RAMTT/1-126; Bacterial type III secretion protein (HrpB1_HrpK) | ali follow.. | 6 | 26 | ..............................................................................................................................................................................................................................EDAQTLVVLRAIRRLRPHAPTLAVVEAQQLVE----NGDLQGARLLLEEADACGTPVVKAMFALVLQQ......... | 91 |
8 | -8.520 | PF13424.4; Q4DK03_TRYCC/687-760; Tetratricopeptide repeat | ali follow.. | 8 | 1 | ................................................................................................................................................................................................................................................HQRPLQNYAQLKCQ-----GDMLSALSLQETELERATSRCMGAIALTKRF......... | 54 |
9 | -8.380 | PF11207.6; F7YLW7_VIBA7/16-218; Protein of unknown function (DUF2989 topsan) | ali follow.. | 17 | 119 | ..........................................................................................................................................................................................................................WSQIGDKSAQRKFLQREGKPELDAEMQYALATFYVQR-----DREKAIYLLHRTLELSNLDAIKSLASTNQILKQKEK... | 197 |
10 | -8.260 | PF10373.7; C0NR07_AJECG/209-489; Est1 DNA/RNA binding domain | ali follow.. | 12 | 1 | ..................................................................................................................................................................................................................................AIRYYKLADTLNPDSGMSHNQLAVIGLA----DGNHLQATYHLYRAAREPYPTSNGNLEIEFRKVLAACAKGE | 71 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013. Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7. |