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Query: gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMCELGYFISSYRLNPYKFRFFPISNYRIHRSGMIFLLYFCCKPKKNIMKKILFILFTVQFILIPRITGSYGANSIGNNHGHSVTNQGKKTIKKDIFGDTVIEDNHGNRKTIKKDIFGDTVIEDNRGNRKTIRKDIFGDTVIEDNRGNRKTIKKDIFGDTVIENNCGNRKTIKKDIFGDTVIEDNRGNRKSIKKDIFGNTVIENNKGYKKTIKTDIFGNKIIEDNHGKKQIIKKDIFGNVIIENYLast
1 -32.500PF06661.9; Q2K2F2_RHIEC/43-358; VirE3  ali follow..  10  1.........ARLEMPKKKRKYTVDMEMVDKLDA-GFRGEISYKIFGNKQLRIDRPKELTREHIFEKTKKVLKRNAETGAVYLSKSWARVTSHQYAEDGTLRTKRDGRFEEKWERDETGSLVRTSEELSAPEPGGPENRRKLTRQVGSRRETFERDDKGGLEVGYKRPGFSRNTTKSEDRHTSQTKISKSYRSLLDKEGNEVGRRRMFNKRSAIYD---------ESTKQLTSIKHTFGKIYKSES 266
2 -28.700PF06788.11; YNFC_SALTY/1-236; Uncharacterised protein family (UPF0257 topsan)  ali follow..  10  34...............SNEFDFDPLRGPV------KDFSQTLMSENGEVAKQV-----------------TGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPS--AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSV------TAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVVDESVKPAVSHHYTIKNRIDY--Y 236
3 -17.600PF05593.12; Q8X4I8_ECO57/575-612; RHS Repeat  ali follow..  1....................YDSRGQLIAVKDTQGHETRYEYNAAGDLTTVIAPDGS............................................................................................................................................................................................ 37
4 -13.100PF15283.4; D3IEK1_9BACT/56-257; Domain of unknown function (DUF4595 topsan) with porin-like fold  ali follow..  1.......................................IQTNEKGQIIS-----------MKSADKNIIFKYTEAVTRSIAPSPDVIMTVTGRDINKVVNLYLNKDGYVLKCDKIDYYYEDRPETNHMYNFSYDRDGHLVTIKGGEEVWSWIYENGDITRVERTDHGEKDDEPWKLYYTSASHLSPIVNKGYLMLFNENIPADLNELSFAYFAGMLGTRVVTGGGESNFSWTLNESRYPTS... 202
5 -13.000PF07202.11; C3YDC5_BRAFL/3-178; T-complex protein 10 C-terminus  ali follow..  19  1.................................................ENVLKDGRRV-ITFSNGTRKEISAD--GQTLIVTFCNGDIKQIMPD--QRVIYYYAEAQTTHTTYPD-GLEILQFPNSQMEKHYPD--GTKEITFPDQTIKYLFPN--GDEESIFQDGTVLRVSKS--GDRVVEFANGQREIHTLN---YKKREYPDGTVKTVYPD--GKQETRYSNGRIRVKDKD--GNIVVDK. 176
6 -9.110PF16435.3; R6WNT6_9PORP/18-290; Domain of unknown function (DUF5032 topsan)  ali follow..  20............................TKNGNAFFNANITYDQDKQINRII---------LNTEGNQFTDNYIIVDKTISVSGVKMIDGSPTNPFVHTVYTLSGNMIAAKEEKSENKYMSNAVYTAVENRYTYSSNWLKSVS-----QIIQWPNEDGSGYQVRELGEVDRYSWENGNAVHYAYLPQKEITYEYNSYGKMNQNTDICAEYTFRYTLTGDYITGMTIEEKINPVNGATAENNTYEY 264
7 -7.810PF12930.5; R6LCR5_9BACE/1-126; Family of unknown function (DUF3836 topsan)  ali follow..  11  15MIIVSVMNSEVKAQDNFITNEEVKNDLVVAKTYNHMRYEFTYDNENRLTGKTASKWDSLQSRWTPYFKMSYQYENNEIIMSYARWNKAHKAYDKDM..................................................................................................................................................... 119
8 -7.540PF13197.4; B8GED5_METPE/30-192; Protein of unknown function (DUF4013 topsan)  ali follow..  9NFIFFGYVMEIYRGTKPAPELENWGTLFVD---KLFIVMLIYAIPVLVILAIFGGISFLSMIASGNANADPT............................................................................................................................................................................. 79
9 -6.630PF15529.4; B5I6X7_9ACTN/321-415; Bacterial toxin 24  ali follow..  19......................KDGTLYKTDPQTGKVTNYTYDSEGRAVKRVDLEGR............................................................................................................................................................................................ 54
10 -6.590PF09799.7; R0KLJ9_ANAPL/1-107; Predicted membrane protein  ali follow..  11  14FLATLAMIFYKRQVFSYPDNFLAPDLTLLFIMAILEALRLYLGSKGNLTEEEAPLGLSLVITVGSVILSVY.............................................................................................................................................................................. 84

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.