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60680875.1-245
Query: gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMCELGYFISSYRLNPYKFRFFPISNYRIHRSGMIFLLYFCCKPKKNIMKKILFILFTVQFILIPRITGSYGANSIGNNHGHSVTNQGKKTIKKDIFGDTVIEDNHGNRKTIKKDIFGDTVIEDNRGNRKTIRKDIFGDTVIEDNRGNRKTIKKDIFGDTVIENNCGNRKTIKKDIFGDTVIEDNRGNRKSIKKDIFGNTVIENNKGYKKTIKTDIFGNKIIEDNHGKKQIIKKDIFGNVIIENYLast
1 -39.100PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)  ali follow..  10  17..CDNPKSLESFT--SNEFDFDPLRGPVKDF------SQTLMSENGEVAKQV-----------------TGTLSQEGCFDTLELHDLENNTELALVLDANYYRDAQTLEKKVQLQGKCQLAALPS--AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPL------GKTTINSQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVVDESVKPAVSHHYTIKNRIDY--Y 236
2 -14.100PF05593.9; Q8X4I8_ECO57/575-612; RHS Repeat  ali follow..  18  1........................................................................YDSRGQLIAVKDTQGHETRYEYNAAGDLTVIAPDGSR........................................................................................................................................ 38
3 -11.100PF07202.8; CENPJ_MOUSE/1165-1343; T-complex protein 10 C-terminus  ali follow..  16  2...............................................................................VEKIYKNGRRVVLFPN--GTRKEVSADGKSVTVTFFN-GDVKQVMPDERVVYYYAAA-GQIEKHFPDGRKEITFPD--QTIKTLFADGQEESIFPD--GTIVRVQRDGNKIIEFNNGQQFKRREYPDGTVKTVYAN--GHQETKYTSGRVRVKDKD--GNVLMDT. 178
4 -10.100PF12930.2; C3Q9K6_9BACE/1-128; Family of unknown function (DUF3836 topsan)  ali follow..  62.....................................YNYKYDDNKRMIESEALKWNSNKDEWEKDLRINYTYEGKTVTTNYYKWNAKKQAYI........................................................................................................................................................ 117
5 -7.640PF08662.6; Q4P692_USTMA/232-427; Eukaryotic translation initiation factor eIF2A  ali follow..  5.................................KADKIQIKWNKAGSALLFMTSTDHDKTGKSYYGETNLYLMSVRGDCRVALDKEGPIHDFEWNPNSKFIVIYGYMPAKAVLFSHRVNVIAELGTQPRNFVAFNPQGRLFCIAGFGNLSG--WDRQEGKIFSMDASNSSVCQWSPDGHFLLTATLSPRLRVEWHCTGQLVHV.......................................... 187
6 -7.170PF06977.6; Q3K534_PSEPF/48-300; SdiA-regulated  ali follow..  15.....AKVIDGLNDDVSALTYDPVRKSLFTVTNKNAEL-IELSLDGAILRRV---------LIGFGDPEAVEFISADTYVITDERQQRLIKIHLEHDTTFLDMSGNKGFEGLAYDSVGKRLFVAKERDPMLYEVHGFPHFNPEKSYAVHVINNPKRDAGMFVRDLSS----LQYDERSGHLLALSDESRLILELDVDGRPLSTKTVPQAEGIAMDDDGTLYLVSEPNLFYVFR............ 253
7 -6.920PF13360.1; A5VB08_SPHWW/125-364; PQQ-like domain  ali follow..  44......................................................................FATNGVGDAAAFDAGNG-SQLWKVRPGGPLRGAPSVGSDAVYVMSQDNQLFALKETNGELIWTASGSGTVVAGFSSGELTAYRYENGRAVWQDSLSRTSITTSVASLVDIDASPVIDQGRVYAVGQGGRMVAMDILTGQRLWELNAGEWLFLVTDDAKLLCIARNS-GRIRWQT. 240
8 -6.590PF01279.12; Q4RSF3_TETNG/13-119; Parathyroid hormone family  ali follow..  15  10LMHDKGRSLQDFS........................................................................................................................................................................................................................................ 22
9 -6.570PF06832.7; A4WD97_ENT38/687-771; Penicillin-Binding Protein C-terminus Family  ali follow..  12................................................................................................................................................................LSGVREGAVIKRLPGESRVSLPLATFGGEGRRWWFLNGEPLDVQGRAYTLQLDKAGDYQVLIMDETGQVATVNF........... 85
10 -6.520PF08796.5; Q1WUY2_LACS1/9-75; Protein of unknown function (DUF1797 topsan)  ali follow..  13  6..................................................................................................................................................................................DAMAKSDSDEVQVRRFEKNGSERGQ--------VAYDPTTNTYTLEEMQTHQKFEFDDIDLAAIEIF 64

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.