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Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221), from B.fragilis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -34.600PF13599.4; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)  ali follow..  59  1....................................................................................................EFISCKLLGTNLSETTMNHVLLHDCNAGYINLAMSKMNQVRFAHSQLRNGSLNDCRFSSVAFESCDLVEADFSHAPLRGID........................................ 81
2 -15.700PF00805.20; A9C0H0_DELAS/87-126; Pentapeptide repeats (8 copies)  ali follow..  32  1..........................................................................ANLTDALFCQSDLNNTNWELAKLASARFLEVKLTGARFGG........................................................................................................... 40
3 -12.100PF12541.6; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)  ali follow..  1.....KKYTEQRFTGERALFQVSDLEIENCTFLDGESPLKESKNLDIRKSMFKHVSVTDSTLDDLKMKNITYVAPKGHHVALENIVFTDATETLWNCDNVSIHGMSAKG-DYFAMGSSNMEIEGLTLD-GNYSFDGCKNVTIRNSHLLSKDAF--NCENITVYDSFVSGEYFG--NAKNVTLINCTIESCYMENLVMKDCKLLNTNLAFEYSTVDVEINSN 240
4 -11.100PF01696.15; E1B55_ADE12/96-479; Adenovirus EB1 55K protein / large t-antigen  ali follow..  14  119......................................................VGLDGITFINVRFAGDKFKGIMFTCLVLHGVYFLNFS-NKVSARGCTFYGCWLVGRPKSKLSVKKCLFEKCVLALIVEGDAHIRHNAASENACFVLLKGMAILKHNMVCGVSVTCADGNCHTLKTVHISHSRHCWPVCDHNMFMRCTIHLGLRRGMFRPSQCNFSHS 304
5 -10.300PF13306.4; A2EUR9_TRIVA/224-352; Leucine rich repeats (6 copies)  ali follow..  18  2...........................................................................FIGSYAFHSCKMTAISIPSTCIGENAFSECR---------SLSDIIFVDINISNHAFYCTNISSIIVPRLSIGNSSFELSNLKQMVFPSSEIGSFAFSKTQLKSIEIPNT.................................... 114
6 -9.850PF05264.9; Q9GSA6_CHOFU/1-138; Choristoneura fumiferana antifreeze protein (CfAFP)  ali follow..  10  20...................................................................................TCVNTNSQITNSQCVKSTATNCYIDNSQLVDTS---------ICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGCSISTCTITRGVATPAKISGCSLSAM................ 138
7 -9.490PF16318.3; Q8A8Y7_BACTN/184-327; Domain of unknown function (DUF4957 topsan)  ali follow..  12  41.........................................................AGLKIKFIDFDFDADTYSASNS---RGVVMFNSTEAGIVQQPYVFQSCTIKDLP-NGYALSSLSITDCLVSIAFNGQGWIKDLSFSNSTIYYT....................................................................... 144
8 -7.870PF13229.4; A8XCU4_CAEBR/377-555; Right handed beta helix region  ali follow..  9.....................................QQINIRRSTAYSNNGTGIYVSEVTLENVVVNANGFYGIHVERLEENKFQMDGVNVAKIGIANSRFHDNKKGGVRISGQF-PNIIFRDCRFLRNSGEIIQFNDFKNASLIMDKCEFVSSNYIDFDGGDSAVSLKNVTGNG-NQLTISNCKF.................................. 179
9 -6.590PF05554.9; Q1AES1_9RHAB/1-122; Viral hemorrhagic septicemia virus non-virion protein  ali follow..  18  5.................................................................................................................................SAHSTTSFSPLVLREMIAYRLTFDPSNYLNSDLDRSEISATDFFETTLSRVDLRTSTLHVLDMRISLLEGTHYILRNVSSSPATTG...... 96
10 -5.930PF03382.12; A5IZG8_MYCAP/271-390; Mycoplasma protein of unknown function, DUF285 topsan  ali follow..  12  7.......................................................................FSHAAEFNQDISKWDTSKVRNISGVFDGAAKFNSPLNNWNVSSVTQMSSFFAGATSFNQDLNLWNTSNVQDMESMFQDATLFNGNIDDWNVSNVNKMYLMFGDAENFSRDLSK..................................... 119

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.