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60680681.1-221
Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221), from B.fragilis

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -28.800PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)  ali follow..  28  1..........................................................................NTFLDCEFIDCNLSMTTLAGTSLKNVSFRNCKLLGIAFNECD------------------DFLFQVHFEDCTLDYAVFSNKKMPKTKFINSSVREVTF................................................. 80
2 -13.800PF00805.17; Q55201_SYNY3/320-359; Pentapeptide repeats (8 copies)  ali follow..  15  1................................................................................................................................................SSLALATLIGTDLREADLRGATLQNVNFSGAKVENLSFGD..................................... 40
3 -12.700PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)  ali follow..  12  96.......................................................RCNNLKLKNVTFPNAQETLWSCDHVDIENVSAKGDYFGMNT-NNLIMKNFQLVG-NYSFDGSRNVEVHDSKLISKD-AFWNTENVTVYDSFITGEYL-GWNAKNLTLINCTIESLQ-GLCYIDNLVMKNCKLINTTLACSKVDSVLNPTSGVIRAKEIGTLTIER. 265
4 -9.020PF01696.12; E1BL_ADE12/96-479; Adenovirus EB1 55K protein / large t-antigen  ali follow..  13  119.................................................VGLDGITFINVRFAGDKFKGIMFEANT--CLVLHGVYFLNFS-NKVSARGCTFYGCWLVGRPKSKLSVKKCLFEKCVLALIVEGDAHIRHNAASENACFVLLKGMAILKHNMVCGVS....................................................... 241
5 -8.440PF13306.1; A2EUR9_TRIVA/224-352; Leucine rich repeats (6 copies)  ali follow..  12  2.......................................................FIGSYAFHSCKMTAISIPSTCIGENAFSECSLSDIIFVDINISNHAFYCTNISSIIVPRLSIGNSSFELSNLKQMVFPSSEIGSFAFSKTQLKSIEIPNTQIGEYAFYHLNLD..................................................... 129
6 -7.980PF05264.6; Q9GSA6_CHOFU/1-138; Choristoneura fumiferana antifreeze protein (CfAFP)  ali follow..  11  20...................................................................................TCVNTNSQITNSQCVKSTATNCYIDNSQL---------VDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGCSISTCTITRTPAAACKISGCSLSA................. 137
7 -6.370PF03382.9; A5IZG8_MYCAA/271-390; Mycoplasma protein of unknown function, DUF285 topsan  ali follow..  12  7.......................................................................FSHAAEFNQDISKWDTSKVRNISGVFDGAAKFNSPLNNWNVSSVTQMSSFFAGATSFNQDLNLWNTSNVQDMESMFQDATLFNGNIDDWNVSNVNKMYLMFGDAENFSRDLSK..................................... 119
8 -6.330PF08480.5; Q8PXS1_METMA/270-470; Disaggregatase related  ali follow..  1......................................................................................MDDIEVYNNVIHNTFGPGLWLIGSSYSKEEARNVHIHHNIFYSTGTNPSIDWVGGIVISGFYDTLIENNVFDGVYHAAVVHMYPDSPKGKGYTTIVRNNIIANTLERKKSSLGTGYGVINYLPESH--SFVIQNN 141
9 -6.310PF13229.1; D2VXU7_NAEGR/1914-2119; Right handed beta helix region  ali follow..  5.................................................IDSSDVTIRKVKIHDTGSDCIKLSPFT-KRISILQSEIYHCGKRKTYQGNPNQDSASGDGIRCVNVD--DVFISRNYIHDLTGTAIKTQGGG-LRAIIERNLILNIGGLGITLGFYEETSYMDPTQNVYYYEAIEGLVRNNIIVNVQGCGVGLYASK--------NSRVLHN 165
10 -5.830PF05554.6; Q1AES1_9RHAB/1-122; Viral hemorrhagic septicemia virus non-virion protein  ali follow..  18  3...............................................................................................................................TQSAHSTTSFSPLVLREMIAYRLTFDPSNYLNSDLDRSEISATDFFETTLSRVDLRTSTLHVLDMRISLLEGTHYILRNVSSSPATTG...... 96

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.