current user: public




Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360
# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -7.910[J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation  ali follow..  21  27..................................................................................................................................................................................................................................................................................................................EKGVEFYCPNCGEVLIRRDHMCRKQGAEYI--CPNCGFK................ 63
2 -7.690[R] KOG4377 Zn-finger protein  ali follow..  300.................................................................................................................................................................................................KFRFNEDCGFEGYRNHQSH-------FHCNRRDCHYSFCDKTRFVQHTARHERMDTLM------------FRQFRANMQCGVASCGYATASGAATETNHLSRIDPTEAVTASSRKTSHFHCRKCDYVCTDSNKVVAH--RHTHYHCVTCDGGVLSRAQLAAHKHR... 481
3 -7.300[R] KOG4582 Uncharacterized conserved protein, contains ZZ-type Zn-finger  ali follow..  1...........................................................................................................................................................................MPEKLLKITYQGAGPQKKIN--AYLRMPSQNYTILRREIELYLFQERQLPKCDVRTFWIDADKDE--------------IEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATKQEGSSANAEAPSVDDPSNFTIHDAVECDGCGLA--LIGFRYKCVQCSNYDLCQKCELAHKHPEHLM........ 165
4 -7.100[S] KOG3277 Uncharacterized conserved protein  ali follow..  21  36....................................................................................................................................................................................................................................................................................................................SLSYTCKVCNSREGPKTFAKSSYEKGVVITCSGCHNHHIIADNIKNIEDHL.. 95
5 -6.940[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  28  1.................................................................................................................................................................................................................................................................................................................MCPRATQTCEICEKV-------------VSKYKCPSCL.................. 25
6 -6.780[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  16........................................................................SIFEISASETLDNLIYPAL-SKIFDYFGLRLDFKLWGSLRIQEELSPLLTWLLQYSSFGESFYGLQRTVTTTGDLLNRYVERKLRTRITRHEDTSPWEQRLLSAFHAFHAAKAAHTFFYLVKYAS--------NHSPIFRLL-----------GLTLRYPSEPPKEDQWTYVVLKMLEVLAFFLQFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLPQRGE--------------CPVCLL----SIQTPTACSVSGYVFCWKCHGTCPVTHYPISLDDLVRI 294
7 -6.710[KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4  ali follow..  11  1.......................................................................MDEFQTLKQNASWDISEDANDTPSLLVVILDANPASWYSLSKKVPVSKVLADITLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRKTMISGALSRAL-IFSLTGDVALQYIPTNCIFCAQKKNIPINVCNIEGGTLFLEQAADATGGIYLKVDNPKQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLS-----------IFCEPRVHCSTCHTKFTVEPM.......... 291
8 -6.580[L] COG3677 Transposase and inactivated derivatives  ali follow..  17  2....................................................................................................................................................................................................................................................................................................................STHCHCPQCGHGNVVKNGFVK----KQRFKCKSCQYQ................ 35
9 -6.530[TZR] KOG1704 FOG: LIM domain  ali follow..  50..............................................................................DDSGCALDEYAWVPSGLKPNMVHAYFACLPENFIGSAGEKWRQRQSRYQLPPQDS--YCEDLNAEEADTLRMFERTRKTECLGSGVVQYAPFDTKCEKML----QGSPDIKFQLPKLKRPPIKMQYDSNIFDFQVIFGDECLEAEGRSWHFQCAQCNDVLADQKYMQRA-----PVCLKCFHSSSST-----------------------------------------------SCTTCRLSFSSDTPHMSQ-ASAECFCCCVCSKNLLGVKYSRVGESLF.. 289
10 -6.470[S] KOG1008 Uncharacterized conserved protein, contains WD40 repeats  ali follow..  511.................................LDRFIDQLYANKEYSRAAMICVFHLKIFHACN------------ILSSAADNMRDPSMYRITVIALSS----FNADRCSSTWRNQRSSANMQIHDPHLRAV--FSFLTMEKDNFDAVLKEEGVSLSDRMAFACK-SETKLADYVAQQIQAAIDGGDLNGLL--------LTGESQDGIDILQSYMDTSFDVQTVALVLFEDKRIQYWIASYLDHLNSWGLWEKRAELDIKIESIRPSSRS---------------------------------SRTVFLSCNFCGKSVSNALLDEPR--TNRLSSCPSCRK................. 776

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.