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Query: gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71), from B.fragilis

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MFDNYAALSYNERENDFINIIIIYNTASYFISHLKMFLSFFIFRNKEKVYECNTLINNTLLNIDSETLSETLast
1 -4.870[S] COG5458 Uncharacterized conserved protein  ali follow..  40....HTTRMVPTRGAEITDGGSLYWVIKGNVQCRQLITEIRPFTDDEGIGRCHLMLDPHVVRTDWQ..... 101
2 -4.530[E] COG0832 Urea amidohydrolase (urease) beta subunit  ali follow..  13  42FAETNPGLIFDRDAARGKRLDIPAGTAVRFEPGQTRQVTLIPLSGKREVFGFRQQVMGKL........... 101
3 -4.470[U] KOG4490 Translocon-associated complex TRAP, gamma subunit  ali follow..  22  130.............DYEATTFSIFYNNTLFLV--VVIVASFFILKNFNPTVN.................... 165
4 -4.360[TR] KOG4561 Uncharacterized conserved protein, contains TBC domain  ali follow..  21  176...........ELSTPFLNIHYFLGSKFQMINGFILIVTFICVR........................... 214
5 -4.230[R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein  ali follow..  21  613................AIVALCVFTAILYCIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDV 667
6 -4.220[S] COG4728 Uncharacterized protein conserved in bacteria  ali follow..  15  52NYRVLGVARHSETEEALVIYQALYGEFGLWVRPLEMFTE................................ 90
7 -4.050[S] KOG4474 Uncharacterized conserved protein  ali follow..  15  180...........ELNSIFLHIRSLMKLTAFRVTVILNIITLVVFR........................... 219
8 -4.000[T] KOG3659 Sodium-neurotransmitter symporter  ali follow..  18  377.....AFSSYNPANNNCYRDAILVSLTNCGTSMFAGVVVFSVFKATATFDRCTEERNGLVAQNKTHNLPV. 443
9 -4.000[KNU] COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor)  ali follow..  30  59............................................NMERVEALKTAIRNGELKMDTGKIAD. 84
10 -3.940[U] KOG0934 Clathrin adaptor complex, small subunit  ali follow..  13  66....YFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIEFIIGGEIQETSKKIAVK. 133

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.