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Query: gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSNKKIANNAANKIDINNKITNNHDIEKKKIKEKINDIEKKEIREITRIIRDVITQIFALFGADNFLVLFPRMDLKGFGYIPQLFFIKPKNELITRTYNTSCSKRPVINYYDRKAEYVSYNPVMTGEHISLNGGILTSLYKDMISLLKMTVFGNTMLRFDAHLVKEQLANRIQAQVPFSIYSPTFGLKELAVITSLSFKDTPFIDEVEVSLSIEIVKTFALEKYKGLast
1 -122.000PF05632.9; Q9S092_BORBU/6-213; Borrelia burgdorferi protein of unknown function (DUF792 topsan)  ali follow..  88  1...................KNIINNNLEKKKFEEKIKDVEKKEFWEITRIIRDVITQIFALFGADNFLVLFPRMDLKGFGYVPQLFFIKPKTELIARTYNTSCSKRPVINYYDRKAEYVSYNPVMIGENISLNGGVLTSLYKEMLSLLKMTVFGNTMLRFDVHLAKEQLANRIQAQVPFSIYSPTFGLKELAVITSLSFKDVPFIDEVEVSLSIEIVKTFELEKYKG 208
2 -7.410PF00576.19; A8JC88_CHLRE/194-314; HIUase/Transthyretin family  ali follow..  16  14....................................................................................................................................AKGLPLALSRQDELSKVWETVGEGVTNEDGRVGNLLPPNYIQPGRYRMFFDTAAYLGACKAAHPAFYSEVPFYPEVVVEFIITLLSPYGFSTYRG 121
3 -6.280PF05860.11; FHAB_BORPE/71-205; haemagglutination activity domain  ali follow..  15  9...............................................................................................QTQVLQGGNKVPVVNIADPNSGGVSHNKFQQFN-VANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRL----TLEVYGKGADLIINGISVNGLSTLNASNLTLT.............. 126
4 -6.080PF11487.6; A5V0X6_ROSS1/3-236; Type II restriction enzyme SfiI  ali follow..  18  32................................RSKAQEIFEKEVDLVSDIGEDITREALERLGMHRI--LFGKIDYKCACYLRQALFVDSKAEEGGSQTATLQMSQISMRVRQKRS----------GKSIDISGEIEPLIKINDNHYLTTTIFVK--YNYRVVQSRKELTSILVTAVPNGILQDTYNPDDNDTIWLAGRDAPTRKEKFRVRLSFDRLK......... 213
5 -5.660PF16347.3; R7DGX3_9PORP/412-514; Domain of unknown function (DUF4976 topsan)  ali follow..  17  4..........................................................................DMQGISLLPLLFYEYPAEHAVKRHYGVRTDKYKLIHFYNDIDAWELYDLEKDPT--EMHNVFDDPEYGKVVDFMNR............................................................................. 92
6 -5.350PF10073.7; D9QNQ3_BRESC/18-89; Uncharacterized protein conserved in bacteria (DUF2312 topsan)  ali follow..  16  13...............................................................................................................................ERLEEDKAAVMEDMKEVFAEAKGEGYDVKILRKVIRIRKQDKAKRQEEDAILDLYLSALG........................................ 72
7 -5.000PF12249.6; C0ZLW4_RHOE4/469-640; Arabinofuranosyltransferase A C terminal  ali follow..  16  1......IPQVLAPDIAVAYSDTDGNGERGDKRPPGAEANYADIDRIIREQLGREPHDTVVLTADIGFLSFYPYFGFQGL---------------------TSHYANPLADFRARAALIEQWSELKTPD--------------ELIAALDASPWRSP-----DAFVFRQGADGYTLRLAEDVYPNDPNVRRYTVTFPKELFDDPRFTVTEQGPFVVVTR......... 172
8 -4.960PF03175.11; DPOM_NEUCS/366-859; DNA polymerase type B, organellar and viral  ali follow..  19  1.............................................................................................................................................KDMLKYDKHTVYCHNFSKFDINFIIKILVQEFVVEKIISKDLDILSIKISYKFHTITIADSCRL--LPGSLD-KLAKDHNIITKKG 94
9 -4.930PF13247.4; C6BUH5_DESAD/66-169; 4Fe-4S dicluster domain  ali follow..  13  2...............................................................................................................................RWLFFPEQCRHCIEPPCKYIANMYTPGSVVQDEKTGAVVMTDKAVIRKGKLESWELCPYNVPRQDKKTGLWSKCDMCLDRVEMGMLPACVQS........ 93
10 -4.870PF03300.11; MVP_RSVT/1-282; Tenuivirus non-structural, movement protein NS4  ali follow..  14  6.....................................................................................LLSTLKSKVLYDDLSEESQKR--VDNKNRKSLALSKRP--------LNQGRVTIDQAATMLGLEPFSFSDVKVNYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLTHYPFFRVETFAMVWIGIKGRASGITTLRIIDKS. 137

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.