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current user: public |
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| Query: gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31], from B.burgdorferi |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 | |||||||
| # | Score | Template | Links and tools | %id | First | MQFYDLREVYFSIGGTQLHSGKLELTSEPTTRAVISSEDKGMPVISLRDPKTITYVFNIEVTLGSHDYILLTELSDEQFYNMDVRKEDKMLDLAFNDRIATKIISNYAIFTEEPSRSYSAEAEKVSFEIRAINCQKSKPNNS | Last |
| 1 | -112.000 | PF07316.6; Q9S002_BORBU/8-147; Protein of unknown function (DUF1463 topsan) | ali follow.. | 99 | 1 | MQFYDLREVYFSIGGTQLHSGKLELTSEPTTRAVISSEDKGMPVISLRDPKTITYVFNIEVTLGSHDYILLTELSDEQFYNMDVRKEDKMLDLAFNDRIATKIISNYAIFTEEPSRSYSAEAEKVSFEIRAINCQKTKPN.. | 140 |
| 2 | -12.900 | PF11681.3; C6BBS2_RALP1/1-146; Protein of unknown function (DUF3277 topsan) | ali follow.. | 13 | 1 | MPAYSFKDVSVSLVGPTGTLSLGYGNAVAEEGVDVNAANDKNTMTVGADGEGMHSLITIRLLKTSPQNQKLMAMYDAQ--AISASLWGKNIITITNSAAADLHVGRECAFKKKPDMKYAKDGDIISWVFDSVKIDS...... | 141 |
| 3 | -7.520 | PF13788.1; B8G072_DESHD/206-317; Domain of unknown function (DUF4180 topsan) | ali follow.. | 8 | 18 | ..............................................IQREQDAIDIISLCAEHGTNAVVLDGNTLSDDFVKLRTGLAGAVLQKFVNYNIKAAVAIKGGQNFPVRFQEMASEHSS.................. | 95 |
| 4 | -7.020 | PF09046.5; HPAB1_PSESS/418-541; AvrPtoB E3 ubiquitin ligase | ali follow.. | 21 | 8 | ...................RAALDIAPQFSQLRTISKADAESEELGFRDANATSCLFGEELSLSNPDQQVINPTDKPQPYSQEVNK-----ALTFMDM--KKLAQYLADKPEHPLNRQRLDAKNIS................ | 116 |
| 5 | -6.810 | PF09070.6; A7SQD4_NEMVE/34-154; PFU (PLAA family ubiquitin binding) | ali follow.. | 25 | 57 | ................................................KGKEYDYVFSVEIQEGKPPLKLPYNVTDDPWVAAHNFLEANDLSQMFLDQVVSFIQKNTA.................................. | 116 |
| 6 | -6.810 | PF03244.9; PSAH_ORYSJ/3-142; Photosystem I reaction centre subunit VI | ali follow.. | 15 | 12 | ...........GLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWD-----------LYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLK............................... | 100 |
| 7 | -6.000 | PF11783.3; A0LEE1_SYNFM/327-501; Cytochrome c bacterial | ali follow.. | 14 | 50 | ...................NGSLTTLTARDTIDPSGVVAVGWPNGDKNDANARIFPFKVHRGRQPYDKVNKTLVIPRLFGKEGTGAYWADYDWSAAAGMAYAGLPFSGELGFVDSTYVFPITHMVAPKDKAVQCQ....... | 167 |
| 8 | -5.860 | PF03559.9; A4X6Y2_SALTO/31-235; NDP-hexose 2,3-dehydratase | ali follow.. | 12 | 48 | .........FFTVEGLHVVRPDVGMEQQP----IIVQTEIGILGILAKEFDGTLHLMQAKVEPGNPNLVQLSQATRSNYTKAHGGTAVKYLEHFLDPPPGG--VLTDVLQSEHGAWFYRKRNRNMIVEI............. | 166 |
| 9 | -5.680 | PF04741.7; INVH_SALCH/1-147; InvH outer membrane lipoprotein | ali follow.. | 18 | 3 | .KFYSCLPVFLLIGCAQVPL--PSSVSKPVQQPGAQQEQLA--ANSIDECQSLPYV----------SDLAKNKSLSNQNADNSASKNSAISSSIFCEKYKQTKEQALTFFQEHPQYMRSKEDEEQLMT.............. | 117 |
| 10 | -5.530 | PF04440.11; DBND1_MOUSE/10-155; Dysbindin (Dystrobrevin binding protein 1) | ali follow.. | 22 | 4 | ............VKDVKVPQAALNVSAHETTPVAEEEEEVGIPIPA-RQP--LSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDDE..................................................... | 91 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013. Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24. |