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11497093
Query: gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGGLast
1 -86.900PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function  ali follow..  36  1............................................MGDTTQLVKDYHDKRNKLAKFMKNPQ--HDSSVLSNSVEFRDKNVQFFASGGTRTSSKDKLENH---PVKGYPYKRGVKLGFSEVEPHIEAGGGDDLYGVCIDIDEFSKTATIIPITNNFEGYLVAKDSSVKTKDKLVFNKDGVLEKVTGANKTTINAIALSDAAQIS-----------------NDAYLVKVEVFGNKAISQ....... 188
2 -31.700PF05113.8; Q5XYW9_BORGA/1-313; Protein of unknown function (DUF693 topsan)  ali follow..  13  46.................IDITISNEFSNYNFVKSKRTKIVLWNLPLDFTNDIEVGDIVKIYYKKFAHEKNF---GTPMSTDYPGGDFSVELDVRLAVSSNFFNKLENK---NFKGKTVQEAIESVFPNRNI-INMDKEDRLKIIEKDIYATTPKEFVDKIKGIYIHDVIADGDSFDVECNFIFTNDRTIEAD-------ENYKALED-YGLEFIPQQE.................................... 242
3 -6.980PF08694.6; UFC1_DICDI/3-163; Ubiquitin-fold modifier-conjugating enzyme 1  ali follow..  10  2....................HTKQTVQQIPLLTVKAGPRDGDKWID---RLKEEYQALIKYVEINKKADNDWFNIESNPLGTRWQGKCWYIYNFKKYEFDLEFDMPV-------TYPET-EIAIPELDGKTEKMYRGGK----ICLTI-HFKPLWSRNVPHFGIAHALALGLAPWLAAEVPHLVDNGIIKH............................................................... 158
4 -5.810PF09923.4; Q1GGG3_SILST/54-142; Uncharacterized protein conserved in bacteria (DUF2155 topsan)  ali follow..  17  8..........................................................................................................................KVNGKSVDVEVQTGGTAEIFGLIVTLNPSGDAFAYLTIRDRFDGWMIASSPALNALDHRRYD...................................................................... 83
5 -5.750PF12809.2; CF127_HUMAN/39-118; Eukaryotic metallothionein  ali follow..  11  8..............................................................................ETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCIYSKNEKWLSIA-----YGRCQKIGR........................................................................................................ 74
6 -5.710PF02772.11; A3ZND4_9PLAN/103-221; S-adenosylmethionine synthetase, central domain  ali follow..  13  3....................................................................................................................................IGAGDQGLMFGYACN-----QTPELMPLPISLSHKILNRLTEARKAGEVNWSKSQVTVQFDGDKPVRIDTVVVSTQHC-----DSVTNAEIRSYVMNEIVKPLLPAELVDGDITYHINPTG. 117
7 -5.390PF00278.17; Q5LXE4_SILPO/280-393; Pyridoxal-dependent decarboxylase, C-terminal sheet domain  ali follow..  15  56...........................................................................................................................................ILAGPSCDSADVLYEKKPVQLPLG-----------LRDGDRIVIRNCGAYTSTYAS--VGFNGFPPLDVVAI........................................... 114
8 -5.350PF12942.2; B2YHH7_9CREN/4-187; Archaeal ammonia monooxygenase subunit A (AmoA)  ali follow..  12  18........................................................................................................YTELDVDIPSWYSISQSTMLAVGAIYYMLFTGGTATYYATIMTIYTWVAKGAVVPVWIPSAMLLDLSHWATRRNKHAAIIIGGTLVGLSLPLFNMVNLLLVRDPLEVAF----------KYPRPTLPAYMTPIEPQVGKFYNSPVALGSG 170
9 -5.300PF09104.5; BRCA2_RAT/2980-3117; BRCA2, oligonucleotide/oligosaccharide-binding, domain 3  ali follow..  13  19........................................................................................................................................SEVDVVGVVVSVVKPIGLAPLVYLSDECLHLLVVKNEDIKPRVLIAASN----LQWRPESTSRVPTLFAGNFSVFSASPKEAHFQER............................... 106
10 -5.200PF12092.3; A7JP31_FRANO/3-131; Protein of unknown function (DUF3568 topsan)  ali follow..  38......................................................................................................................................................YINGNYIIEVPRDIRSVYNATIKTIQMDSQNKL-----ISQTYNTKSATIKALQKGEKISIDLSNIDSRSTEIK----------IRIGVLGDEKKSADL..... 121

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.