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Query: gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGGLast
1 -83.600PF02989.12; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function  ali follow..  37  2.............................................ADTTQLVKDYQEKRSKLEKFMKNPQHD--AGLLSNSVEFRDKNIQFFASGGTRTSKFDKLENH---PFSGYPYKRGVKRVIQEYEPHVEAGGEDDLYGICIDIDEFSKTATIVPITNNFEGYLVAKDSTLKVKDKLVFNKDGALEKVTGANKATINAIALSDAKQIS-----------------NDVYLIKVAVFGNKAVSK....... 190
2 -5.770PF03287.12; VH21_RFVKA/1-146; Poxvirus C7/F8A protein  ali follow..  13  1.............................................................................................................................................................MGIQHKLDVFIVSENIAIKDANLLNGDSYGCTIKLKLNTKKSVRFVVLDEIKPMYMKLNGVSVDLKLDYKDAIKIYSVDLVLYSDSVIH........ 96
3 -5.700PF00179.24; W1Q6W9_OGAPD/7-176; Ubiquitin-conjugating enzyme  ali follow..  12  1.................................................RLLKEYRAVQKELAEKRSSIRDTGIVDLHPLEDGLFRWSAVIKGENALWRLEIDIPTNYPLDPPQ----SGTRKVCYKMPHPNVNFKTGE----ICLDIQKWSPAWTLQSALVAIVVLLANPEPLLKCDDMTAYRD..................................................................... 165
4 -5.390PF08762.8; O56051_9VIRU/590-790; CRPV capsid protein like  ali follow..  12  1..............................................TFNASMLMMGEKVTSFRQLIKRFSAITPPTQNRYWEFTQPFWINTNRLEGVTQEGSSDIDGISW--ASLYAFYRGYKIAPLSNAPNSLYSGVRVIDTEVFMTPNEGIHELSIPYYSSYP-VTLTTYNSTDSDVLDARNGFNRVIARFHSDTSAYVYRAAGDDFSFG.......................................... 187
5 -5.190PF16456.3; C5BD74_EDWI9/26-107; YmgD protein  ali follow..  22  2.......................................................................................................................................GLPADVYMTCADAGEMAKTAEIVAIMGN--ASVESRGLKIAKTAGTDKAVVDKLNQACAADPQMLLITAIDNAMR............................................ 79
6 -5.140PF09923.7; B1LS81_METRJ/35-126; Uncharacterized protein conserved in bacteria (DUF2155 topsan)  ali follow..  16  8..........................................................................................................................KITGRIVNFEVAVDETVQFGALQLTPTESAKTTAFLEVDEVFTGWMFASSPGLHAIEHPIYD...................................................................... 86
7 -5.120PF16986.3; B2UC49_RALPJ/56-133; Heavy-metal resistance protein CzcE  ali follow..  13  1............................................................................................................................................LFGSPAPVSLAARTLTVKPGMKYI---------NVESGETVAFSAGTGTQAWTFIEAMQSTSVDLGVLL............................................. 60
8 -5.090PF04636.11; H2RRP9_TAKRU/38-481; PA26 p53-induced protein (sestrin)  ali follow..  232.RMKQLQECRDDEEASQEEMATRFEREKTESMLVVTAEDEESAPSRDISRHFEDPSYGYKEFSRRGEQVPTLRVQDYSWEDHGFSLVNRLYPDVGQMLDEKFQLAYNLTYNTMATHMLRRAIWNYIHC------------MFGIRYDDYDYGEINQLLD-FKIYIKTMVCSPEKTTRRM------ESFWRQFQHSEKVHVNLLLMEARMQAEL-------------------------LYALRAITRYM..... 444
9 -5.070PF08268.10; FB113_ARATH/132-255; F-box associated domain  ali follow..  10  1..............................................................................................................................................GICID----NNDIVIVCFDVRSEEFRFIIGSLINYNGKLSLYLPSTVYSRFNGVIRSIKLWVLEDAKRQEWSEHTYILPAMHDIMKTTDLRCVGMTQTKEFVFWSI...... 117
10 -5.020PF02772.14; C7N539_SLAHD/146-265; S-adenosylmethionine synthetase, central domain  ali follow..  14  1...................................................................................................................................KIGAGDQGMVFGYACN-----ETSTLMPMPIYLAHRLSERLTEVRKDGTLNYGKTQVSVRYVDGKPTQVEKVLISTQHAEEATIDQIRHDLIE.............................. 92

FFAS is supported by the NIH grant R01-GM087218-01
8 5 9 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.